## ----include = FALSE----------------------------------------------------------
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

## ----setup--------------------------------------------------------------------
library(rLifting)

if (!requireNamespace("ggplot2", quietly = TRUE)) {
  knitr::opts_chunk$set(eval = FALSE)
  message("Required package 'ggplot2' is missing. Vignette code will not run.")
} else {
  library(ggplot2)
}

set.seed(42)
n = 1000
t = seq(0, 10 * pi, length.out = n)
clean = sin(t)
noisy = clean + rnorm(n, sd = 0.5)

## ----processor----------------------------------------------------------------
stream_proc = new_wavelet_stream(
  scheme      = lifting_scheme("haar"),
  window_size = 128,
  levels      = floor(log2(128)),   # 7 levels, full decomposition
  method      = "semisoft",
  alpha       = 0.5,
  beta         = 1.0
)

## ----loop---------------------------------------------------------------------
output = numeric(n)
process_time = numeric(n)

for (i in 1:n) {
  start = Sys.time()
  output[i] = stream_proc(noisy[i])
  end = Sys.time()
  process_time[i] = as.numeric(end - start)
}

df = data.frame(
  Time  = 1:n,
  Noisy = noisy,
  Filtered = output,
  Truth = clean
)

## ----latency------------------------------------------------------------------
# Exclude the first sample (JIT / initialization overhead)
latency_us = process_time[-1] * 1e6

cat(sprintf("Median latency: %.1f \u00b5s\n", median(latency_us)))
cat(sprintf("95th percentile: %.1f \u00b5s\n", quantile(latency_us, 0.95)))
cat(sprintf("Max latency: %.1f \u00b5s\n", max(latency_us)))

## ----latency_hist, fig.width=6, fig.height=3.5--------------------------------
hist(latency_us,
     main = "Per-sample processing latency",
     xlab = expression(paste("Latency (", mu, "s)")),
     col = "steelblue", border = "white", breaks = 40)

## ----plot, fig.width=7, fig.height=4.5----------------------------------------
seg = subset(df, Time > 200 & Time < 600)

ggplot(seg, aes(x = Time)) +
  geom_line(aes(y = Noisy), colour = "grey75", linewidth = 0.3) +
  geom_line(aes(y = Truth), colour = "black", linetype = "dashed",
            linewidth = 0.6) +
  geom_line(aes(y = Filtered), colour = "#D55E00", linewidth = 0.8) +
  labs(title = "Real-time denoising of a noisy sine wave",
       subtitle = "Haar wavelet, W = 128, semisoft thresholding",
       x = "Sample index", y = "Amplitude") +
  theme_minimal()

## ----mse----------------------------------------------------------------------
# Exclude warm-up phase
steady = df$Time > 128
mse_noisy    = mean((df$Noisy[steady] - df$Truth[steady])^2)
mse_filtered = mean((df$Filtered[steady] - df$Truth[steady])^2)

cat(sprintf("MSE (noisy):    %.4f\n", mse_noisy))
cat(sprintf("MSE (filtered): %.4f\n", mse_filtered))
cat(sprintf("Noise reduction: %.1f%%\n", (1 - mse_filtered / mse_noisy) * 100))