In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. <doi:10.1186/1748-7188-2-15>.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.5.0) |
| Imports: | Rcpp (≥ 0.11.1) |
| LinkingTo: | Rcpp |
| Suggests: | testthat |
| Published: | 2026-01-19 |
| DOI: | 10.32614/CRAN.package.TFMPvalue |
| Author: | Ge Tan [aut, cre] |
| Maintainer: | Ge Tan <ge_tan at live.com> |
| BugReports: | https://github.com/ge11232002/TFMPvalue/issues |
| License: | GPL-2 |
| Copyright: | 2007 LIFL-USTL-INRIA |
| URL: | https://github.com/ge11232002/TFMPvalue |
| NeedsCompilation: | yes |
| CRAN checks: | TFMPvalue results |
| Reference manual: | TFMPvalue.html , TFMPvalue.pdf |
| Package source: | TFMPvalue_1.0.0.tar.gz |
| Windows binaries: | r-devel: TFMPvalue_1.0.0.zip, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): TFMPvalue_1.0.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): TFMPvalue_1.0.0.tgz, r-oldrel (x86_64): not available |
| Old sources: | TFMPvalue archive |
| Reverse imports: | motifbreakR, TFBSTools, transite |
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