Last updated on 2026-01-13 00:50:22 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 40.20 | 814.95 | 855.15 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 23.65 | 522.57 | 546.22 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 71.00 | 1391.17 | 1462.17 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 64.00 | 1321.51 | 1385.51 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 37.00 | 581.00 | 618.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 50.83 | 736.83 | 787.66 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 38.01 | 740.60 | 778.61 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 540.00 | 577.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 118.00 | 126.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 27.00 | 736.00 | 763.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 53.00 | 618.00 | 671.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [112s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-13 10:24:30.636031: Isomap START
> test_pipeop_isomap.R: 2026-01-13 10:24:30.636293: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:30.639604: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:30.646416: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 10:24:30.661567: Isomap START
> test_pipeop_isomap.R: 2026-01-13 10:24:30.661701: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:30.663905: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:30.669647: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 10:24:30.675531: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 10:24:30.675652: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:30.679624: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:30.692881: embedding
> test_pipeop_isomap.R: 2026-01-13 10:24:30.693198: DONE
> test_pipeop_isomap.R: 2026-01-13 10:24:30.700729: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 10:24:30.700923: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:30.706555: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:30.723921: embedding
> test_pipeop_isomap.R: 2026-01-13 10:24:30.724406: DONE
> test_pipeop_isomap.R: 2026-01-13 10:24:30.745911: Isomap START
> test_pipeop_isomap.R: 2026-01-13 10:24:30.746051: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:30.750998: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:30.788795: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 10:24:30.799198: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 10:24:30.799411: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:30.808902: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:30.8977: embedding
> test_pipeop_isomap.R: 2026-01-13 10:24:30.898833: DONE
> test_pipeop_isomap.R: 2026-01-13 10:24:30.935888: Isomap START
> test_pipeop_isomap.R: 2026-01-13 10:24:30.936017: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:30.938479: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:30.945185: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 10:24:30.954241: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 10:24:30.954496: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:30.96807: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:30.985424: embedding
> test_pipeop_isomap.R: 2026-01-13 10:24:30.985968: DONE
> test_pipeop_isomap.R: 2026-01-13 10:24:31.021779: Isomap START
> test_pipeop_isomap.R: 2026-01-13 10:24:31.021954: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:31.024285: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:31.030388: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 10:24:31.043275: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 10:24:31.043491: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:31.048802: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:31.065125: embedding
> test_pipeop_isomap.R: 2026-01-13 10:24:31.065528: DONE
> test_pipeop_isomap.R: 2026-01-13 10:24:31.085206: Isomap START
> test_pipeop_isomap.R: 2026-01-13 10:24:31.085352: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:31.08773: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:31.09441: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 10:24:31.10747: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 10:24:31.107663: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:31.112731: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:31.130326: embedding
> test_pipeop_isomap.R: 2026-01-13 10:24:31.130754: DONE
> test_pipeop_isomap.R: 2026-01-13 10:24:31.152137: Isomap START
> test_pipeop_isomap.R: 2026-01-13 10:24:31.152275: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:31.15507: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:31.162096: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 10:24:31.175107: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 10:24:31.175286: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:31.179748: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:31.196663: embedding
> test_pipeop_isomap.R: 2026-01-13 10:24:31.197141: DONE
> test_pipeop_isomap.R: 2026-01-13 10:24:31.216111: Isomap START
> test_pipeop_isomap.R: 2026-01-13 10:24:31.216236: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:31.218319: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:31.224945: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 10:24:31.239336: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 10:24:31.23955: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:31.244501: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:31.260261: embedding
> test_pipeop_isomap.R: 2026-01-13 10:24:31.260702: DONE
> test_pipeop_isomap.R: 2026-01-13 10:24:31.28401: Isomap START
> test_pipeop_isomap.R: 2026-01-13 10:24:31.284165: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:31.293506: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:31.299995: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 10:24:31.320282: Isomap START
> test_pipeop_isomap.R: 2026-01-13 10:24:31.320407: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:31.322355: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:31.327794: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 10:24:31.332461: Isomap START
> test_pipeop_isomap.R: 2026-01-13 10:24:31.33256: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 10:24:31.334437: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 10:24:31.340065: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [321s/395s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-12 17:32:58.542895: Isomap START
> test_pipeop_isomap.R: 2026-01-12 17:32:58.543438: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:32:58.56863: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:32:58.617643: Classical Scaling
> test_pipeop_isomap.R: 2026-01-12 17:32:58.862796: Isomap START
> test_pipeop_isomap.R: 2026-01-12 17:32:58.863101: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:32:58.883845: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:32:58.918714: Classical Scaling
> test_pipeop_isomap.R: 2026-01-12 17:32:58.969236: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-12 17:32:58.96967: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:32:59.02781: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:32:59.136157: embedding
> test_pipeop_isomap.R: 2026-01-12 17:32:59.137292: DONE
> test_pipeop_isomap.R: 2026-01-12 17:32:59.188487: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-12 17:32:59.188804: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:32:59.220602: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:32:59.355424: embedding
> test_pipeop_isomap.R: 2026-01-12 17:32:59.381956: DONE
> test_pipeop_isomap.R: 2026-01-12 17:32:59.561585: Isomap START
> test_pipeop_isomap.R: 2026-01-12 17:32:59.561891: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:32:59.591704: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:32:59.848478: Classical Scaling
> test_pipeop_isomap.R: 2026-01-12 17:32:59.926035: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-12 17:32:59.926483: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:00.01882: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:00.548377: embedding
> test_pipeop_isomap.R: 2026-01-12 17:33:00.56817: DONE
> test_pipeop_isomap.R: 2026-01-12 17:33:01.573912: Isomap START
> test_pipeop_isomap.R: 2026-01-12 17:33:01.574252: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:01.599206: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:01.632441: Classical Scaling
> test_pipeop_isomap.R: 2026-01-12 17:33:01.695873: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-12 17:33:01.696289: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:01.725977: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:01.834722: embedding
> test_pipeop_isomap.R: 2026-01-12 17:33:01.835886: DONE
> test_pipeop_isomap.R: 2026-01-12 17:33:02.102939: Isomap START
> test_pipeop_isomap.R: 2026-01-12 17:33:02.103243: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:02.109944: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:02.157092: Classical Scaling
> test_pipeop_isomap.R: 2026-01-12 17:33:02.242608: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-12 17:33:02.248454: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:02.287886: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:02.375828: embedding
> test_pipeop_isomap.R: 2026-01-12 17:33:02.376933: DONE
> test_pipeop_isomap.R: 2026-01-12 17:33:02.536791: Isomap START
> test_pipeop_isomap.R: 2026-01-12 17:33:02.53709: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:02.554419: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:02.603: Classical Scaling
> test_pipeop_isomap.R: 2026-01-12 17:33:02.692248: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-12 17:33:02.692701: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:02.775788: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:02.873711: embedding
> test_pipeop_isomap.R: 2026-01-12 17:33:02.874847: DONE
> test_pipeop_isomap.R: 2026-01-12 17:33:03.031758: Isomap START
> test_pipeop_isomap.R: 2026-01-12 17:33:03.032062: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:03.039184: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:03.085928: Classical Scaling
> test_pipeop_isomap.R: 2026-01-12 17:33:03.187489: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-12 17:33:03.18795: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:03.220526: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:03.33333: embedding
> test_pipeop_isomap.R: 2026-01-12 17:33:03.334483: DONE
> test_pipeop_isomap.R: 2026-01-12 17:33:03.480345: Isomap START
> test_pipeop_isomap.R: 2026-01-12 17:33:03.480641: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:03.509294: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:03.539367: Classical Scaling
> test_pipeop_isomap.R: 2026-01-12 17:33:03.634084: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-12 17:33:03.634537: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:03.676673: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:03.790653: embedding
> test_pipeop_isomap.R: 2026-01-12 17:33:03.791829: DONE
> test_pipeop_isomap.R: 2026-01-12 17:33:03.97397: Isomap START
> test_pipeop_isomap.R: 2026-01-12 17:33:03.974293: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:03.981036: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:04.030868: Classical Scaling
> test_pipeop_isomap.R: 2026-01-12 17:33:04.201293: Isomap START
> test_pipeop_isomap.R: 2026-01-12 17:33:04.201605: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:04.25053: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:04.297793: Classical Scaling
> test_pipeop_isomap.R: 2026-01-12 17:33:04.331491: Isomap START
> test_pipeop_isomap.R: 2026-01-12 17:33:04.331781: constructing knn graph
> test_pipeop_isomap.R: 2026-01-12 17:33:04.35272: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-12 17:33:04.411185: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [279s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-05 17:10:18.000803: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.001822: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.016234: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.038918: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:18.114544: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.115168: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.126832: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.14891: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:18.189564: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.190254: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.294737: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.335578: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:18.336862: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:18.38209: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.382775: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.403685: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.44051: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:18.441906: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:18.562249: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.562857: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.585138: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.690194: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:18.739394: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:18.740079: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:18.779494: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:18.980606: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:18.985685: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:19.204969: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.20559: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.215899: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.236987: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:19.289005: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.289876: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.307619: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.353702: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:19.355303: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:19.511482: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.511936: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.51863: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.533563: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:19.595101: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.596039: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.614963: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.666046: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:19.667642: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:19.781182: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.781789: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.799444: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.815658: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:19.881228: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:19.882259: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:19.900811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:19.937499: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:19.9387: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:20.04102: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.04162: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.067441: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.089866: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.169186: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.170107: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.186432: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.230027: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:20.231546: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:20.34159: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.342098: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.34929: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.365845: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.41623: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.416922: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.442262: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.491627: embedding
> test_pipeop_isomap.R: 2026-01-05 17:10:20.493363: DONE
> test_pipeop_isomap.R: 2026-01-05 17:10:20.62114: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.621785: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.631884: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.649447: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.785893: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.786638: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.798355: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.819076: Classical Scaling
> test_pipeop_isomap.R: 2026-01-05 17:10:20.852864: Isomap START
> test_pipeop_isomap.R: 2026-01-05 17:10:20.85349: constructing knn graph
> test_pipeop_isomap.R: 2026-01-05 17:10:20.864854: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-05 17:10:20.897752: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64