Last updated on 2026-08-17 23:49:17 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.0 | 16.74 | 319.21 | 335.95 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.5.0 | 9.10 | 169.24 | 178.34 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.5.0 | 10.00 | 199.20 | 209.20 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.5.0 | 10.00 | 204.49 | 214.49 | OK | |
| r-devel-windows-x86_64 | 0.5.0 | 19.00 | 426.00 | 445.00 | OK | |
| r-patched-linux-x86_64 | 0.5.0 | 15.49 | 304.61 | 320.10 | OK | |
| r-release-linux-x86_64 | 0.5.0 | 16.08 | 303.54 | 319.62 | OK | |
| r-release-macos-arm64 | 0.5.0 | 4.00 | 85.00 | 89.00 | OK | |
| r-release-macos-x86_64 | 0.5.0 | 10.00 | 385.00 | 395.00 | OK | |
| r-release-windows-x86_64 | 0.5.0 | 20.00 | 0.00 | 20.00 | OK | |
| r-oldrel-macos-arm64 | 0.5.0 | 3.00 | 96.00 | 99.00 | OK | |
| r-oldrel-macos-x86_64 | 0.5.0 | 10.00 | 402.00 | 412.00 | OK | |
| r-oldrel-windows-x86_64 | 0.5.0 | 25.00 | 513.00 | 538.00 | OK |
Version: 0.5.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [68s/184s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bidser)
Attaching package: 'bidser'
The following object is masked from 'package:base':
parse
>
> test_check("bidser")
BIDS Project Summary
Project Name: bidser_core_38858b81db7da
Participants (n): 2
Participants Source: file
Tasks: rest
Index: disabled
Image Types: func, anat
Modalities: (none)
Keys: folder, kind, relative_path, run, subid, suffix, task, type
adding: bidser_pk_38858b/dataset_description.json (stored 0%)
adding: bidser_pk_38858b/participants.tsv (stored 0%)
adding: bidser_pk_38858b/sub-01/anat/sub-01_T1w.nii.gz (stored 0%)
adding: bidser_pk_38858b/sub-01/func/sub-01_task-rest_run-01_bold.json (stored 0%)
adding: bidser_pk_38858b/sub-01/func/sub-01_task-rest_run-01_bold.nii.gz (stored 0%)
adding: bidser_pk_38858b/sub-01/func/sub-01_task-rest_run-01_events.tsv (stored 0%)
adding: bidser_pk_38858b/dataset_description.json (stored 0%)
adding: bidser_pk_38858b/participants.tsv (stored 0%)
adding: bidser_pk_38858b/sub-01/anat/sub-01_T1w.nii.gz (stored 0%)
adding: bidser_pk_38858b/sub-01/func/sub-01_task-rest_run-01_bold.json (stored 0%)
adding: bidser_pk_38858b/sub-01/func/sub-01_task-rest_run-01_bold.nii.gz (stored 0%)
adding: bidser_pk_38858b/sub-01/func/sub-01_task-rest_run-01_events.tsv (stored 0%)
Saving _problems/test_events-8.R
Saving _problems/test_events-19.R
Saving _problems/test_events-29.R
Saving _problems/test_events-38.R
Saving _problems/test_events-54.R
Saving _problems/test_events-76.R
Saving _problems/test_func_scans-9.R
Saving _problems/test_func_scans-46.R
Saving _problems/test_func_scans-91.R
Mock BIDS Project Summary
Project Name: MethodTest
Participants (n): 2
Tasks: taskA
Sessions: pre
Derivatives: derivatives/mockprep
Datatypes: anat, func
Suffixes: nii.gz, tsv
BIDS Keys: (none)
Path: mock://MethodTest
levelName
1 test_proj
2 °--raw
Saving _problems/test_preproc_scans-169.R
BIDS Report
Project: bidser_report_38858b1aec575f
Participants source: file
Subjects: 1
Sessions: 0
Tasks: rest
Total runs: 1
Compliance: passed
Index: available
Indexed runs: 1
[ FAIL 10 | WARN 23 | SKIP 22 | PASS 1668 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Could not test bids_check_compliance with ds001: Failed to download BIDS
examples: Too Many Requests (RFC 6585) (HTTP 429). (1):
'test_summary_compliance.R:58:5'
• Could not test bids_summary with ds001: Failed to download BIDS examples: Too
Many Requests (RFC 6585) (HTTP 429). (1): 'test_summary_compliance.R:31:5'
• Could not test sessions with ds007: Failed to download BIDS examples: Too
Many Requests (RFC 6585) (HTTP 429). (1): 'test_sessions.R:25:5'
• Mock derivatives dataset not available (7): 'test_preproc_scans.R:20:3',
'test_preproc_scans.R:35:3', 'test_preproc_scans.R:56:3',
'test_preproc_scans.R:84:3', 'test_preproc_scans.R:101:3',
'test_preproc_scans.R:129:3', 'test_preproc_scans.R:157:3'
• On CRAN (6): 'test_mock_bids.R:407:3', 'test_mock_bids.R:465:3',
'test_mock_bids.R:588:3', 'test_pack_bids.R:2:3', 'test_pack_bids.R:43:3',
'test_pack_bids.R:216:3'
• Phoneme dataset with fmriprep derivatives not available (2):
'test_preproc_mask.R:14:3', 'test_preproc_mask.R:22:3'
• Test requires internet connection or derivatives dataset: Failed to download
BIDS examples: Too Many Requests (RFC 6585) (HTTP 429). (2):
'test_bids_subject.R:71:5', 'test_bids_subject.R:101:5'
• Test requires internet connection or valid dataset: Failed to download BIDS
examples: Too Many Requests (RFC 6585) (HTTP 429). (1):
'test_bids_subject.R:37:5'
• phoneme_stripped dataset not found - tests will be skipped (1):
'test_search_files.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_events.R:8:3'): can extract event files from bids project ──────
Error in `value[[3L]](cond)`: Failed to download BIDS examples: Too Many Requests (RFC 6585) (HTTP 429).
Backtrace:
▆
1. └─bidser:::setup_test_dataset("ds001") at test_events.R:8:3
2. └─bidser:::download_bids_example(dataset_name) at ./helper-bids-examples.R:338:3
3. └─bidser:::download_bids_repo(cache_dir, force_refresh) at ./helper-bids-examples.R:307:3
4. └─base::tryCatch(...) at ./helper-bids-examples.R:75:3
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
── Error ('test_events.R:19:3'): can search for event files from bids project ──
Error in `value[[3L]](cond)`: Failed to download BIDS examples: Too Many Requests (RFC 6585) (HTTP 429).
Backtrace:
▆
1. └─bidser:::setup_test_dataset("ds001") at test_events.R:19:3
2. └─bidser:::download_bids_example(dataset_name) at ./helper-bids-examples.R:338:3
3. └─bidser:::download_bids_repo(cache_dir, force_refresh) at ./helper-bids-examples.R:307:3
4. └─base::tryCatch(...) at ./helper-bids-examples.R:75:3
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
── Error ('test_events.R:29:3'): can read in event files from bids project ─────
Error in `value[[3L]](cond)`: Failed to download BIDS examples: Too Many Requests (RFC 6585) (HTTP 429).
Backtrace:
▆
1. └─bidser:::setup_test_dataset("ds001") at test_events.R:29:3
2. └─bidser:::download_bids_example(dataset_name) at ./helper-bids-examples.R:338:3
3. └─bidser:::download_bids_repo(cache_dir, force_refresh) at ./helper-bids-examples.R:307:3
4. └─base::tryCatch(...) at ./helper-bids-examples.R:75:3
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
── Error ('test_events.R:38:3'): can read in event files from a single subject ──
Error in `value[[3L]](cond)`: Failed to download BIDS examples: Too Many Requests (RFC 6585) (HTTP 429).
Backtrace:
▆
1. └─bidser:::setup_test_dataset("ds001") at test_events.R:38:3
2. └─bidser:::download_bids_example(dataset_name) at ./helper-bids-examples.R:338:3
3. └─bidser:::download_bids_repo(cache_dir, force_refresh) at ./helper-bids-examples.R:307:3
4. └─base::tryCatch(...) at ./helper-bids-examples.R:75:3
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
── Error ('test_events.R:54:3'): run filtering works ───────────────────────────
Error in `value[[3L]](cond)`: Failed to download BIDS examples: Too Many Requests (RFC 6585) (HTTP 429).
Backtrace:
▆
1. └─bidser:::setup_test_dataset("ds001") at test_events.R:54:3
2. └─bidser:::download_bids_example(dataset_name) at ./helper-bids-examples.R:338:3
3. └─bidser:::download_bids_repo(cache_dir, force_refresh) at ./helper-bids-examples.R:307:3
4. └─base::tryCatch(...) at ./helper-bids-examples.R:75:3
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
── Error ('test_events.R:76:3'): session filtering works ───────────────────────
Error in `value[[3L]](cond)`: Failed to download BIDS examples: Too Many Requests (RFC 6585) (HTTP 429).
Backtrace:
▆
1. └─bidser:::setup_test_dataset("ds114") at test_events.R:76:3
2. └─bidser:::download_bids_example(dataset_name) at ./helper-bids-examples.R:338:3
3. └─bidser:::download_bids_repo(cache_dir, force_refresh) at ./helper-bids-examples.R:307:3
4. └─base::tryCatch(...) at ./helper-bids-examples.R:75:3
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
── Error ('test_func_scans.R:9:3'): can extract functional files from bids project ──
Error in `value[[3L]](cond)`: Failed to download BIDS examples: Too Many Requests (RFC 6585) (HTTP 429).
Backtrace:
▆
1. └─bidser:::setup_test_dataset("ds001") at test_func_scans.R:9:3
2. └─bidser:::download_bids_example(dataset_name) at ./helper-bids-examples.R:338:3
3. └─bidser:::download_bids_repo(cache_dir, force_refresh) at ./helper-bids-examples.R:307:3
4. └─base::tryCatch(...) at ./helper-bids-examples.R:75:3
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
── Error ('test_func_scans.R:46:3'): can extract functional files for one subject from bids project ──
Error in `value[[3L]](cond)`: Failed to download BIDS examples: Too Many Requests (RFC 6585) (HTTP 429).
Backtrace:
▆
1. └─bidser:::setup_test_dataset("ds001") at test_func_scans.R:46:3
2. └─bidser:::download_bids_example(dataset_name) at ./helper-bids-examples.R:338:3
3. └─bidser:::download_bids_repo(cache_dir, force_refresh) at ./helper-bids-examples.R:307:3
4. └─base::tryCatch(...) at ./helper-bids-examples.R:75:3
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
── Error ('test_func_scans.R:91:3'): attempt to find func_scan with non-existent id should return NULL ──
Error in `value[[3L]](cond)`: Failed to download BIDS examples: Too Many Requests (RFC 6585) (HTTP 429).
Backtrace:
▆
1. └─bidser:::setup_test_dataset("ds001") at test_func_scans.R:91:3
2. └─bidser:::download_bids_example(dataset_name) at ./helper-bids-examples.R:338:3
3. └─bidser:::download_bids_repo(cache_dir, force_refresh) at ./helper-bids-examples.R:307:3
4. └─base::tryCatch(...) at ./helper-bids-examples.R:75:3
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
── Error ('test_preproc_scans.R:169:3'): returns NULL when project lacks fmriprep data ──
Error in `value[[3L]](cond)`: Failed to download BIDS examples: Too Many Requests (RFC 6585) (HTTP 429).
Backtrace:
▆
1. └─bidser:::setup_test_dataset("ds001") at test_preproc_scans.R:169:3
2. └─bidser:::download_bids_example(dataset_name) at ./helper-bids-examples.R:338:3
3. └─bidser:::download_bids_repo(cache_dir, force_refresh) at ./helper-bids-examples.R:307:3
4. └─base::tryCatch(...) at ./helper-bids-examples.R:75:3
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
[ FAIL 10 | WARN 23 | SKIP 22 | PASS 1668 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘confounds-and-variables.Rmd’ using rmarkdown
--- finished re-building ‘confounds-and-variables.Rmd’
--- re-building ‘derivatives.Rmd’ using rmarkdown
--- finished re-building ‘derivatives.Rmd’
--- re-building ‘mock-bids.Rmd’ using rmarkdown
--- finished re-building ‘mock-bids.Rmd’
--- re-building ‘quickstart.Rmd’ using rmarkdown
Quitting from quickstart.Rmd:91-100 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `path.expand()`:
! invalid 'path' argument
---
Backtrace:
▆
1. └─bidser::bids_project(ds001_path)
2. └─base::normalizePath(path, winslash = "/")
3. └─base::path.expand(path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'quickstart.Rmd' failed with diagnostics:
invalid 'path' argument
--- failed re-building ‘quickstart.Rmd’
SUMMARY: processing the following file failed:
‘quickstart.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc