Last updated on 2026-01-11 15:49:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.4 | 28.69 | 329.04 | 357.73 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.4 | 18.05 | 207.13 | 225.18 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.4 | 57.00 | 444.37 | 501.37 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.4 | 50.00 | 471.40 | 521.40 | ERROR | |
| r-devel-windows-x86_64 | 0.2.4 | 28.00 | 440.00 | 468.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.4 | 29.11 | 256.85 | 285.96 | ERROR | |
| r-release-linux-x86_64 | 0.2.4 | 27.72 | 257.31 | 285.03 | ERROR | |
| r-release-macos-arm64 | 0.2.4 | OK | ||||
| r-release-macos-x86_64 | 0.2.4 | 17.00 | 423.00 | 440.00 | OK | |
| r-release-windows-x86_64 | 0.2.4 | 39.00 | 413.00 | 452.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.2.4 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.4 | 20.00 | 377.00 | 397.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.4 | 50.00 | 536.00 | 586.00 | ERROR |
Version: 0.2.4
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Naeem Khoshnevis [aut] (<https://orcid.org/0000-0003-4315-1426>, HUIT), Boyu Ren [aut, cre] (<https://orcid.org/0000-0002-5300-1184>, McLean Hospital), Tanujit Dey [ctb] (<https://orcid.org/0000-0001-5559-211X>, HMS), Danielle Braun [aut] (<https://orcid.org/0000-0002-5177-8598>, HSPH)’
Authors@R: ‘Naeem Khoshnevis [aut] (ORCID: <https://orcid.org/0000-0003-4315-1426>, AFFILIATION: HUIT), Boyu Ren [aut, cre] (ORCID: <https://orcid.org/0000-0002-5300-1184>, AFFILIATION: McLean Hospital), Tanujit Dey [ctb] (ORCID: <https://orcid.org/0000-0001-5559-211X>, AFFILIATION: HMS), Danielle Braun [aut] (ORCID: <https://orcid.org/0000-0002-5177-8598>, AFFILIATION: HSPH)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [127s/137s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-08 17:36:11.455299 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-08 17:36:16.060026 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-08 17:36:19.990953 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-08 17:36:26.559479 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:36:30.179168 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:36:34.024584 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3014181 on localhost:11724 at 17:36:34.384
2026-01-08 17:36:38.540044 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.512 s.
2026-01-08 17:36:38.629733 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:36:42.840437 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:36:46.720286 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-08 17:36:50.986718 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:36:55.203839 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:36:57.932947 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:01.071653 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:01.118224 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:04.914877 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:04.940563 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:04.980406 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:05.003932 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:05.029508 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:05.072436 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:05.111339 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:05.148572 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:08.635914 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
starting worker pid=3022800 on localhost:11724 at 17:37:09.014
starting worker pid=3022801 on localhost:11724 at 17:37:09.049
2026-01-08 17:37:18.597531 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:22.127061 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:22.143027 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:22.151588 gimli2 3006428 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3025943 on localhost:11724 at 17:37:22.546
2026-01-08 17:37:27.813991 gimli2 3006428 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.65700000000001 s.} ...
2026-01-08 17:37:27.816913 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3026783 on localhost:11724 at 17:37:28.197
2026-01-08 17:37:32.716487 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.90000000000001 s.
2026-01-08 17:37:32.738425 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3027750 on localhost:11724 at 17:37:33.301
2026-01-08 17:37:38.701316 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.96300000000001 s.
2026-01-08 17:37:38.703661 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 16.56 s.
2026-01-08 17:37:38.717378 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:38.729319 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:38.767579 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:38.779333 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:38.934711 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:38.945199 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:38.981419 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:41.546864 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:41.559959 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:41.597939 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:41.615811 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:41.695397 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-08 17:37:45.531497 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:49.504146 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3033032 on localhost:11724 at 17:37:49.910
2026-01-08 17:37:54.239774 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.735 s.
2026-01-08 17:37:54.248972 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3034051 on localhost:11724 at 17:37:54.717
2026-01-08 17:38:00.281312 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 6.039 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-08 17:38:00.424048 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:38:03.100469 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:38:06.898516 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3038195 on localhost:11724 at 17:38:07.226
2026-01-08 17:38:11.854297 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.95599999999999 s.
2026-01-08 17:38:11.916521 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:38:15.809913 gimli2 3006428 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3040419 on localhost:11724 at 17:38:16.159
2026-01-08 17:38:22.537616 gimli2 3006428 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.72499999999999 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [71s/101s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-10 13:22:55.104365 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-10 13:22:58.6179 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-10 13:23:02.397976 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-10 13:23:08.403501 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:23:11.636886 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:23:15.234818 gimli1 2547300 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2561984 on localhost:11061 at 13:23:15.656
2026-01-10 13:23:17.907624 gimli1 2547300 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.673 s.
2026-01-10 13:23:17.934452 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:23:21.203703 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:23:24.539283 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-10 13:23:28.03404 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:23:30.947861 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:23:32.935643 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:23:35.163002 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:23:35.195322 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:23:38.487269 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:23:38.51488 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:23:38.544865 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:23:38.578834 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:23:38.614371 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:23:38.647658 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:23:38.683067 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:23:38.708339 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:23:42.349575 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
starting worker pid=2583700 on localhost:11061 at 13:23:42.770
starting worker pid=2583701 on localhost:11061 at 13:23:42.776
2026-01-10 13:23:49.002845 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:23:52.256453 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:23:52.276733 gimli1 2547300 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 13:23:52.279533 gimli1 2547300 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=2593936 on localhost:11061 at 13:23:52.710
2026-01-10 13:23:55.772854 gimli1 2547300 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.492 s.} ...
2026-01-10 13:23:55.774879 gimli1 2547300 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2597247 on localhost:11061 at 13:23:56.221
2026-01-10 13:23:58.77358 gimli1 2547300 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.999 s.
2026-01-10 13:23:58.775284 gimli1 2547300 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=2600424 on localhost:11061 at 13:23:59.151
2026-01-10 13:24:02.273313 gimli1 2547300 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.498 s.
2026-01-10 13:24:02.275183 gimli1 2547300 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.999 s.
2026-01-10 13:24:02.278996 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:24:02.291863 gimli1 2547300 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 13:24:02.308978 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:24:02.323962 gimli1 2547300 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 13:24:02.369038 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:24:02.384603 gimli1 2547300 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 13:24:02.399422 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:24:04.722643 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:24:04.742684 gimli1 2547300 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 13:24:04.756038 gimli1 2547300 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-09 r89293), detected cores: 64
2026-01-10 13:24:04.774428 gimli1 2547300 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 13:24:04.79379 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-10 13:24:08.062146 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:24:10.892735 gimli1 2547300 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2611840 on localhost:11061 at 13:24:11.176
2026-01-10 13:24:13.472127 gimli1 2547300 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.58 s.
2026-01-10 13:24:13.473577 gimli1 2547300 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=2613604 on localhost:11061 at 13:24:13.856
2026-01-10 13:24:16.696734 gimli1 2547300 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.223 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-10 13:24:16.731977 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:24:19.060709 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:24:22.287717 gimli1 2547300 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2619661 on localhost:11061 at 13:24:22.552
2026-01-10 13:24:24.977628 gimli1 2547300 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.69000000000001 s.
2026-01-10 13:24:25.007556 gimli1 2547300 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 13:24:28.517034 gimli1 2547300 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=2625857 on localhost:11061 at 13:24:28.776
2026-01-10 13:24:32.645678 gimli1 2547300 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.127 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [146s/402s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-08 22:39:30.998349 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-08 22:39:45.656449 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-08 22:40:01.852319 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-08 22:40:21.234273 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:40:28.984776 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:40:38.156516 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2672205 on localhost:11538 at 22:40:38.803
2026-01-08 22:40:49.472605 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 11.316 s.
2026-01-08 22:40:49.644656 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:40:59.094515 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:41:10.359439 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-08 22:41:20.106376 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:41:32.451833 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:41:44.879764 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:41:51.299549 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:41:51.439171 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:42:01.591402 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:01.677539 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:01.772459 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:01.943199 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:02.028103 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:02.113674 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:02.344102 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:02.619447 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:42:11.027693 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
starting worker pid=2681134 on localhost:11538 at 22:42:12.114
starting worker pid=2681139 on localhost:11538 at 22:42:13.137
2026-01-08 22:42:47.407496 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:42:58.24701 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:58.273742 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:42:58.291538 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=2685305 on localhost:11538 at 22:42:59.281
2026-01-08 22:43:11.302314 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 13.003 s.} ...
2026-01-08 22:43:11.307634 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2686266 on localhost:11538 at 22:43:12.051
2026-01-08 22:43:26.851436 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 15.544 s.
2026-01-08 22:43:26.859962 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=2687587 on localhost:11538 at 22:43:27.603
2026-01-08 22:43:46.131346 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 19.271 s.
2026-01-08 22:43:46.140441 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 47.867 s.
2026-01-08 22:43:46.246974 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:43:46.269138 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:43:46.323866 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:43:46.350092 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:43:46.460846 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:43:46.529205 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:43:46.600512 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:43:54.081097 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:43:54.654818 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:43:54.682213 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:43:54.759469 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:43:54.90262 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-08 22:44:07.275781 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:44:18.096669 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2692575 on localhost:11538 at 22:44:19.190
2026-01-08 22:44:33.57265 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 15.476 s.
2026-01-08 22:44:33.584849 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=2693949 on localhost:11538 at 22:44:34.551
2026-01-08 22:44:53.517762 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 19.933 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-08 22:44:54.772832 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:45:07.943978 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:45:16.283155 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2699042 on localhost:11538 at 22:45:16.973
2026-01-08 22:45:27.913061 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 11.63 s.
2026-01-08 22:45:27.98944 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:45:39.165211 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=2702052 on localhost:11538 at 22:45:40.347
2026-01-08 22:45:55.256909 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 16.088 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [142s/346s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-03 08:34:06.73367 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-03 08:34:20.269132 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-03 08:34:30.62967 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-03 08:34:47.635888 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:34:57.988268 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:08.016407 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1195763 on localhost:11437 at 08:35:08.561
2026-01-03 08:35:17.350611 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 9.33399999999999 s.
2026-01-03 08:35:17.547488 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:26.491516 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:35.733676 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-03 08:35:46.098705 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:55.270946 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:02.375742 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:08.468615 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:08.515654 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:18.895044 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:18.951343 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.008601 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.119817 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.189037 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.246526 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.309588 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.387205 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:30.648525 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
starting worker pid=1204902 on localhost:11437 at 08:36:31.437
starting worker pid=1204903 on localhost:11437 at 08:36:31.474
2026-01-03 08:36:56.776655 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:37:09.87984 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:09.964198 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:10.011706 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1214291 on localhost:11437 at 08:37:10.686
2026-01-03 08:37:22.126932 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 12.103 s.} ...
2026-01-03 08:37:22.135026 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1215630 on localhost:11437 at 08:37:22.953
2026-01-03 08:37:34.873498 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.739 s.
2026-01-03 08:37:34.878176 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1217201 on localhost:11437 at 08:37:35.401
2026-01-03 08:37:49.107587 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 14.23 s.
2026-01-03 08:37:49.115177 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 39.151 s.
2026-01-03 08:37:49.131002 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.155499 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.20553 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.229289 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.339863 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.363846 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.414392 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:37:56.6043 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:56.633393 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:56.68298 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:56.71309 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:56.833935 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-03 08:38:07.282704 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:38:18.375271 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1221451 on localhost:11437 at 08:38:19.028
2026-01-03 08:38:30.977238 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.601 s.
2026-01-03 08:38:30.981696 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1223815 on localhost:11437 at 08:38:31.976
2026-01-03 08:38:44.627997 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 13.646 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-03 08:38:44.84637 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:38:53.749221 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:39:04.146436 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1228863 on localhost:11437 at 08:39:04.873
2026-01-03 08:39:17.105902 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.959 s.
2026-01-03 08:39:17.167503 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:39:28.738544 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1232048 on localhost:11437 at 08:39:29.330
2026-01-03 08:39:40.705118 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 11.963 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [145s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-07 09:45:00.377953 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-07 09:45:06.579208 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-07 09:45:12.089938 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-07 09:45:20.893808 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:26.706987 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:32.390597 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=64548 on localhost:11519 at 09:45:32.636
2026-01-07 09:45:35.313287 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.92 s.
2026-01-07 09:45:35.359963 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:40.810236 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:46.427722 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-07 09:45:51.995621 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:57.396928 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:00.659471 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:04.628317 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:04.638464 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:10.41802 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.431782 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.446358 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.461432 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.476509 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.491818 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.507116 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.524061 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:16.122667 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
starting worker pid=35092 on localhost:11519 at 09:46:16.394
starting worker pid=61180 on localhost:11519 at 09:46:16.394
2026-01-07 09:46:23.464277 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:29.535601 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:29.538266 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:29.542183 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=103296 on localhost:11519 at 09:46:29.820
2026-01-07 09:46:32.704279 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.14999999999999 s.} ...
2026-01-07 09:46:32.706837 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=107688 on localhost:11519 at 09:46:32.959
2026-01-07 09:46:35.261713 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.57000000000001 s.
2026-01-07 09:46:35.265539 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=45152 on localhost:11519 at 09:46:35.506
2026-01-07 09:46:38.801665 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.53 s.
2026-01-07 09:46:38.804796 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.26000000000001 s.
2026-01-07 09:46:38.809965 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:38.813043 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:38.827097 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:38.829845 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:38.86132 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:38.864485 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:38.879274 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:43.509154 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:43.511426 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:43.521788 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:43.524313 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:43.555696 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-07 09:46:48.462633 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:53.787782 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=14444 on localhost:11519 at 09:46:54.054
2026-01-07 09:46:56.720936 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.92 s.
2026-01-07 09:46:56.723528 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=64252 on localhost:11519 at 09:46:56.969
2026-01-07 09:46:59.742616 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.03 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-07 09:46:59.799379 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:47:04.318071 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:47:10.139357 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=70692 on localhost:11519 at 09:47:10.395
2026-01-07 09:47:13.157881 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.02000000000001 s.
2026-01-07 09:47:13.19039 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:47:18.512842 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=45608 on localhost:11519 at 09:47:18.729
2026-01-07 09:47:21.928186 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.42000000000002 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/152s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-07 05:52:14.359857 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-07 05:52:20.045834 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-07 05:52:25.392892 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-07 05:52:34.357755 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:39.072313 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:43.563875 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3394364 on localhost:11956 at 05:52:43.935
2026-01-07 05:52:47.861479 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.297 s.
2026-01-07 05:52:47.951594 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:52.307539 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:57.765159 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-07 05:53:03.313407 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:08.207243 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:12.353824 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:15.707112 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:15.73402 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:20.245301 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.276569 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.297124 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.33072 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.354787 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.388278 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.429523 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.471643 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:24.65668 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
starting worker pid=3404209 on localhost:11956 at 05:53:24.972
starting worker pid=3404208 on localhost:11956 at 05:53:25.098
2026-01-07 05:53:33.402274 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:38.005343 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:38.013165 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:38.020826 gimli2 3383799 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3407430 on localhost:11956 at 05:53:38.423
2026-01-07 05:53:43.297664 gimli2 3383799 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.27500000000001 s.} ...
2026-01-07 05:53:43.300836 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3408703 on localhost:11956 at 05:53:43.714
2026-01-07 05:53:47.290467 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.98899999999999 s.
2026-01-07 05:53:47.292852 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3410376 on localhost:11956 at 05:53:47.670
2026-01-07 05:53:52.94118 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.64800000000001 s.
2026-01-07 05:53:52.943611 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.931 s.
2026-01-07 05:53:52.948986 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:52.963566 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:52.983352 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:52.992322 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:53.058511 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:53.067342 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:53.093966 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:56.814679 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:56.827197 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:56.852689 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:56.865293 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:56.929239 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-07 05:54:02.274351 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:07.719117 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3415269 on localhost:11956 at 05:54:08.123
2026-01-07 05:54:12.190488 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.471 s.
2026-01-07 05:54:12.192771 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3416351 on localhost:11956 at 05:54:12.611
2026-01-07 05:54:16.895272 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.702 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-07 05:54:16.960993 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:20.649861 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:25.366387 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3419951 on localhost:11956 at 05:54:25.696
2026-01-07 05:54:29.361293 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.995 s.
2026-01-07 05:54:29.415876 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:34.66923 gimli2 3383799 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3422324 on localhost:11956 at 05:54:35.178
2026-01-07 05:54:41.229543 gimli2 3383799 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.55700000000002 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [84s/155s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-10 05:44:23.708058 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-10 05:44:29.631677 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-10 05:44:34.675044 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-10 05:44:43.048047 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:44:48.008036 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:44:53.087554 gimli2 3011003 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3021815 on localhost:11388 at 05:44:53.536
2026-01-10 05:44:57.85586 gimli2 3011003 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.768 s.
2026-01-10 05:44:57.949511 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:45:02.903948 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:45:08.381092 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-10 05:45:15.407789 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:45:20.544796 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:45:24.405085 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:45:27.475589 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:45:27.517959 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:45:33.026586 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:45:33.054556 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:45:33.088362 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:45:33.120388 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:45:33.15884 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:45:33.190977 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:45:33.231292 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:45:33.272983 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:45:38.454225 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
starting worker pid=3033020 on localhost:11388 at 05:45:38.898
starting worker pid=3033021 on localhost:11388 at 05:45:38.963
2026-01-10 05:45:47.950924 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:45:53.073812 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:45:53.084273 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 05:45:53.092759 gimli2 3011003 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3036523 on localhost:11388 at 05:45:53.549
2026-01-10 05:45:57.833293 gimli2 3011003 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.738 s.} ...
2026-01-10 05:45:57.83587 gimli2 3011003 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3038237 on localhost:11388 at 05:45:58.230
2026-01-10 05:46:02.001351 gimli2 3011003 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.16600000000001 s.
2026-01-10 05:46:02.003806 gimli2 3011003 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3039469 on localhost:11388 at 05:46:02.346
2026-01-10 05:46:06.82712 gimli2 3011003 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.82299999999999 s.
2026-01-10 05:46:06.829326 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 13.746 s.
2026-01-10 05:46:06.842441 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:46:06.851893 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 05:46:06.875941 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:46:06.88729 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 05:46:06.959885 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:46:06.971212 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 05:46:07.003303 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:46:10.617239 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:46:10.62714 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 05:46:10.653222 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-10 05:46:10.662468 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-10 05:46:10.725307 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-10 05:46:15.372012 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:46:20.149204 gimli2 3011003 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3044382 on localhost:11388 at 05:46:20.470
2026-01-10 05:46:23.818765 gimli2 3011003 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.67 s.
2026-01-10 05:46:23.821162 gimli2 3011003 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3045024 on localhost:11388 at 05:46:24.144
2026-01-10 05:46:29.278239 gimli2 3011003 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.45699999999999 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-10 05:46:29.346493 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:46:32.92434 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:46:37.524607 gimli2 3011003 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3048654 on localhost:11388 at 05:46:37.861
2026-01-10 05:46:42.072946 gimli2 3011003 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.548 s.
2026-01-10 05:46:42.100316 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-10 05:46:47.071975 gimli2 3011003 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3051876 on localhost:11388 at 05:46:47.489
2026-01-10 05:46:52.515042 gimli2 3011003 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.441 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [146s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-07 09:21:17.114046 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-07 09:21:22.963045 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-07 09:21:28.917937 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-07 09:21:37.906501 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:21:43.295393 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:21:48.5217 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=27524 on localhost:11772 at 09:21:48.807
2026-01-07 09:21:51.492925 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.97000000000001 s.
2026-01-07 09:21:51.572678 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:21:57.483563 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:03.252271 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-07 09:22:09.361009 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:14.96016 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:18.549809 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:23.108796 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:23.122847 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:28.440489 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.452898 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.461225 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.471676 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.480077 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.489696 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.500732 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.516936 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:33.534709 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
starting worker pid=82400 on localhost:11772 at 09:22:33.801
starting worker pid=33968 on localhost:11772 at 09:22:33.852
2026-01-07 09:22:40.92937 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:46.552524 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:46.555454 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:46.559623 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=99404 on localhost:11772 at 09:22:46.820
2026-01-07 09:22:49.623891 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.05999999999999 s.} ...
2026-01-07 09:22:49.626153 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=105556 on localhost:11772 at 09:22:49.878
2026-01-07 09:22:52.388816 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.75 s.
2026-01-07 09:22:52.391919 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=76496 on localhost:11772 at 09:22:52.702
2026-01-07 09:22:56.076346 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.68000000000001 s.
2026-01-07 09:22:56.079143 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.53 s.
2026-01-07 09:22:56.083799 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:56.086699 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:56.099104 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:56.101404 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:56.143046 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:56.145554 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:56.157861 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:00.46251 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:23:00.465065 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:23:00.476378 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:23:00.479095 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:23:00.517118 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-07 09:23:05.955452 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:11.266958 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=107288 on localhost:11772 at 09:23:11.526
2026-01-07 09:23:14.0467 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.78 s.
2026-01-07 09:23:14.049096 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=27816 on localhost:11772 at 09:23:14.321
2026-01-07 09:23:17.215913 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.16 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-07 09:23:17.269341 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:21.954476 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:27.52312 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=57564 on localhost:11772 at 09:23:27.794
2026-01-07 09:23:30.289776 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.77000000000001 s.
2026-01-07 09:23:30.317935 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:35.670567 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=87672 on localhost:11772 at 09:23:35.908
2026-01-07 09:23:39.186142 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.5 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [206s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-05 16:57:23.62878 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-05 16:57:32.82465 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-05 16:57:41.360011 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-05 16:57:52.975546 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:01.455334 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:09.93103 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=26956 on localhost:11044 at 16:58:10.276
2026-01-05 16:58:13.740134 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.81 s.
2026-01-05 16:58:13.806471 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:21.393564 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:29.374142 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-05 16:58:37.271728 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:44.88705 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:58:49.915431 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:56.499752 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:58:56.512752 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:04.740577 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.756815 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.773356 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.791154 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.808977 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.826021 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.843517 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.857898 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:13.496917 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
starting worker pid=80984 on localhost:11044 at 16:59:13.810
starting worker pid=84680 on localhost:11044 at 16:59:13.889
2026-01-05 16:59:23.145014 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:31.432715 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:31.43565 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:31.440607 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=11840 on localhost:11044 at 16:59:31.767
2026-01-05 16:59:35.084238 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.64000000000001 s.} ...
2026-01-05 16:59:35.08664 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=21596 on localhost:11044 at 16:59:35.437
2026-01-05 16:59:38.869814 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.78 s.
2026-01-05 16:59:38.872782 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=61816 on localhost:11044 at 16:59:39.139
2026-01-05 16:59:43.150226 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.28 s.
2026-01-05 16:59:43.15355 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 11.71 s.
2026-01-05 16:59:43.16102 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.165756 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.184282 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.18671 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.224996 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.229204 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.245437 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:50.067591 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:50.07189 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:50.091592 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:50.096234 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:50.145882 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-05 16:59:57.978731 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:05.671469 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=40176 on localhost:11044 at 17:00:05.955
2026-01-05 17:00:09.651378 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.96000000000001 s.
2026-01-05 17:00:09.654629 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=111168 on localhost:11044 at 17:00:10.016
2026-01-05 17:00:14.191393 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.54999999999998 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-05 17:00:14.24468 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:20.969078 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:28.496578 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=104596 on localhost:11044 at 17:00:28.779
2026-01-05 17:00:32.33652 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.84 s.
2026-01-05 17:00:32.373872 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:40.090548 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=66204 on localhost:11044 at 17:00:40.410
2026-01-05 17:00:44.82498 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.72 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64