fb93964590a5c66641fd14cc7094960d *DESCRIPTION
b991db1951fb867c58949418e5f4335c *NAMESPACE
9fff17be19be000477ce8d0fe0835bb7 *NEWS.md
bac1c34d38e696d8b291dabe8a38a3db *R/RcppExports.R
523cc8d4c32a7d3c0fe18b1533367934 *R/calc_K.R
084ab97657c67cef97257f415c839419 *R/calculate_MAT.R
56c7f8bf3c5ad87ec73585bba6a9ee58 *R/calculate_error.R
3a3ee727e634298171c4469e58f01649 *R/estimate_time.R
05a8d622591823d28273e076c59f9995 *R/estimate_time_diploid.R
901a840761ce022e610d672034ea0ea9 *R/estimate_time_haploid.R
ddf9cc7a1651ae0d553635f0ce0aaac8 *R/estimate_time_one_chrom.R
068fbf1fb9c53b5ef60ee7d13381f0cc *R/log_likelihood_diploid.R
f8f765820d8ede1e5a1a0345e37b6153 *R/log_likelihood_haploid.R
3c9673a07b38b675096d5ff53f12b8fc *R/number_of_junctions.R
374206027f1c6cb6244d9ece0c185d4a *R/number_of_junctions_backcross.R
3a2dd21826354feb60f119b04b5510de *R/number_of_junctions_di.R
336dbb6a31f658db7780512e40700b39 *R/number_of_junctions_markers.R
f182c67430b04257b5c00b9b80dcb14a *R/sim_backcrossing.R
58f2324ec63cb36091bafff29e4b3536 *R/sim_fin_chrom.R
31962009126309238bee547ed8542c74 *R/sim_inf_chrom.R
6eb66d78622a2b9dd096df3df8880513 *R/sim_phased_unphased.R
0ce3d4ce8d14224ffc708c63ab606868 *R/util.R
e3bb47e59b8730ba3ec1a4b0e1aea018 *README.md
7f0c8a25b59f21707535d4986a2071d6 *build/vignette.rds
11a2212a8cbba1d1705a056ce52fe194 *inst/CITATION
300d96d39a8d620367d54d8c051a3301 *inst/doc/Overview_of_the_junctions_package.R
6f891167d3ae49f9fbdd927ba3f88c90 *inst/doc/Overview_of_the_junctions_package.Rmd
4f95b243943cdecafa000f8dd89da7c2 *inst/doc/Overview_of_the_junctions_package.html
59034db3af14349b1bc7cc3a7c5a1222 *inst/doc/junctions_vignette.R
b2da2bdfcc69494129ec95e99b90377e *inst/doc/junctions_vignette.Rmd
34d24b4669a73bd4388113c5b16dbf5a *inst/doc/junctions_vignette.html
89762f80a1c96ff798b1470ca41004d7 *inst/doc/phased_and_unphased_data.R
ae3acee9df82835cba7c2cabd7cad6ec *inst/doc/phased_and_unphased_data.Rmd
83a06963b1e625f0a8f1c9c5ef6e1610 *inst/doc/phased_and_unphased_data.html
813d2d78f4bbf6a96c41ae88b989a7f5 *man/calc_k.Rd
ee2978930780dd020cd3cb199e0828b0 *man/calculate_mat.Rd
01791bf5425b9fdd062d3f2d6ef236f4 *man/estimate_time.Rd
821c05352a1047bb7bec79852d115295 *man/estimate_time_diploid.Rd
7901e2c1f80559cbd7401217b05c92b8 *man/estimate_time_haploid.Rd
5509875d060bc6d47c8c19c7ee55abd1 *man/estimate_time_one_chrom.Rd
c4dd651be4b32cb88b49ba1085931d07 *man/junctions-package.Rd
5a0b5c8e71d17107e1a770592b1170e3 *man/log_likelihood_diploid.Rd
2143bede846e4947528c20c80d6b374a *man/log_likelihood_haploid.Rd
054c14c92c6729c2dd7c3f0f8c9e5290 *man/number_of_junctions.Rd
29564485fa8964caf07a030ff980355e *man/number_of_junctions_backcross.Rd
949916f851ebe49bb3f197871cefa4b3 *man/number_of_junctions_di.Rd
dd516c675a3315b301c97a5a59b956af *man/number_of_junctions_markers.Rd
f4e3d91cd395fe500b603dc78006d163 *man/sim_backcrossing.Rd
c4ba73712444b91f13b125f0ce505913 *man/sim_fin_chrom.Rd
1f42d0b94fa5b312ef03e8027973e82d *man/sim_inf_chrom.Rd
ee3389fdcdaa8a5d6050eaa014d1ccf3 *man/sim_phased_unphased.Rd
4c5753918aaac16743531597f50e66e4 *man/time_error.Rd
24e420a81f7f29ac6a5e7780eb281146 *src/Fish.cpp
cd0c231957aa8b24779164322b3208b6 *src/Fish.h
665033d0ef12525cb6de24862d3c8202 *src/Makevars
66fac2b02015d922d6e751e3a8a57074 *src/Makevars.win
1db2aaf4563c1c5bf24d2f10514e5c9c *src/Output.cpp
25c8bcce01d137ca7743b2ba53648998 *src/Output.h
96b741ddcc813f2759a33c6e8c851b96 *src/RcppExports.cpp
76114e3c2446ee43f63451de6c8e7418 *src/backcrossing.cpp
514d0e348f24f60f8faf9c898739d453 *src/estimate_time_unphased.cpp
37107eae50b6057d9c5bf6076b3010b3 *src/estimate_time_unphased.h
4502d772bb7fb45436fc4a2a35ac055b *src/main_functions.cpp
d3c3c08f4d0fd314f3abc8b1c2a2cef0 *src/random_functions.h
1fd08ada2381641f4dbcd81b629d46e0 *src/tbb_stub.h
388312494408b95a895f239cd6420801 *src/unphased.cpp
4d268dc5fa7ca05035425c8403f35f20 *tests/testthat.R
5fcb48d2368db39299bf9660a7be0e01 *tests/testthat/test-backcrossing.R
1846e203e64d69d0e6be8fe5bf1b00ac *tests/testthat/test-equations.R
497fa0b2bc6da437b68dcb6ff5b43143 *tests/testthat/test-estim_time_haploid.R
c205853c9d83ae4d6a92427433c82502 *tests/testthat/test-marker_dist.R
5278c8d257eb2ca69c1026be89f95686 *tests/testthat/test-one-chrom.R
662e1e1d67dfdd4cf22594d167fdc93d *tests/testthat/test-phased-error.R
18e5f2cd786c80105be9bdf8d93963df *tests/testthat/test-phased.R
6fd315b583b905075c8de18247fbbcf0 *tests/testthat/test-sims.R
9efc5de97ab7b44eaac12a3aebbe20ea *tests/testthat/test-unphased.R
6f891167d3ae49f9fbdd927ba3f88c90 *vignettes/Overview_of_the_junctions_package.Rmd
b2da2bdfcc69494129ec95e99b90377e *vignettes/junctions_vignette.Rmd
ae3acee9df82835cba7c2cabd7cad6ec *vignettes/phased_and_unphased_data.Rmd
