d8e78e0b3e014fc91cb34c42d12f7e0d *DESCRIPTION
3630588cf2c968f65fc1ff4bd525d811 *NAMESPACE
bd70fcb76b67b490a0254dc09da49b39 *NEWS.md
b7e403cbac1975dfabbd5b1e6ec68cfc *R/Cindex.R
6cda00917190b3fc58c687c0db56b7e4 *R/RcppExports.R
4bd3eb09b5b5e4d5dd4a6d885c734b0d *R/assess.coxnet.R
7172891b9097b44ef3d8951153eee111 *R/assess.glmnet.R
6d3a93c6972ccbfee9aa0c264cb08ad3 *R/auc.R
8cd96999dce298c1d81ce51ea2f6d2a3 *R/auc.mat.R
4e064fb1e6aa6396369a08b60eea1ad4 *R/bigGlm.R
d8808544bfbafb423ce60e359ade4b64 *R/blend.relaxed.R
04a38d922c4c78910aee28eb063fd474 *R/buildPredmat.array.R
66e8a7ccb8a590a2add53fa043f6ff39 *R/buildPredmat.coxnetlist.R
019453d01483ecda68866eaa73e1df3c *R/buildPredmat.default.R
885a478709d197d973cdc621cd3e5225 *R/check.dots.R
612fef55db8dfaf923f5b986d8dad11e *R/check.exclude.R
f596fb839a1e3042a81df9590e2cc3bd *R/coef.cv.glmnet.R
da1e68b0c4ae43a6ffcaa2ea3d7c287a *R/coef.cv.relaxed.R
f288cf974491d93b56e5c4d6d204d658 *R/coef.glmnet.R
a42ad691868ee94b3eae743299af81bc *R/coef.relaxed.R
ab05dba77ad585b2ac3a465c26fc2b00 *R/coefnorm.R
ee4cc296f6a922b28ba89fe64fa5ce56 *R/confusion.glmnet.R
3767eb616ee680437869ef4084908295 *R/coxgrad.R
da2b0987c56cb6c822d2e0bcac6d49cd *R/coxnet.R
df66b22ae87a5f098b07141cc4f0588f *R/coxnet.deviance.R
07016f000442c65ed8cba9d99bd7f570 *R/cv.coxnet.R
b3593fdbb51ba45fa9581d246850de4f *R/cv.elnet.R
b2f4b2ab04489c3378cc4532551720ba *R/cv.fishnet.R
0524ce16be527073265387338812f1c2 *R/cv.glmnet.R
bc99f4900326c84840c496237af40ebf *R/cv.glmnet.raw.R
1500e23337c4de6276f9745adfbcefcf *R/cv.glmnetfit.R
86747e59ed9762208d848cf84d815095 *R/cv.lognet.R
5f5234bbe3dc2fbc77015609ad7094d7 *R/cv.mrelnet.R
ece778c00ca6b58e088f6a700d23e15b *R/cv.multnet.R
a5f5822d94d18f666f4e5087ce0bcbe0 *R/cv.relaxed.raw.R
c739878e7fc617dab75e8cd65cf9b356 *R/cvcompute.R
2b98d1871792cda71bd9323e9ee2a0b0 *R/cvstats.R
90e2fb9130f89ddaef65e43202dc4261 *R/cvtype.R
9a25662a16138900203c201bb4bd057b *R/data.R
959eaac0e190795f3ee1ced251d60a90 *R/deviance.glmnet.R
73741eabd56bb9e084c8cc859538698a *R/elnet.R
0c6c0b1dfa5c98b55f2e9e097df3747d *R/error.bars.R
9cf716424fdcf017725b7941fed3727c *R/family.glmnet.R
90d73f437e5e342b9cbe9f5f4e822746 *R/fishnet.R
ebce52c8995ee16c058c2aa93bdcf582 *R/fix.lam.R
c65547cba8e3d5ad16b28a84881e7fca *R/getOptcv.glmnet.R
b0325f5e584fbe646aedb73d02f6b86d *R/getOptcv.relaxed.R
dd14d7acb21ae8f1bb87a54ea763950b *R/getcoef.R
c1a8bceef71c915555f8bffc7298137e *R/getcoef.multinomial.R
7b58c77160c9ee6af320e1b597a8723b *R/glmnet-package.R
93e5790321797386296e2540665f150c *R/glmnet.R
4f520ffdb9884c422f51f14810c0d6d2 *R/glmnet.control.R
741a587449cd2f3613c2e52f25bc0280 *R/glmnet.measures.R
47df7f807bcb93fd07a8f677c0273000 *R/glmnetFlex.R
a6224dfa92ac162a19e455b90ec64108 *R/glmnet_softmax.R
45e70c6598a06eab929bb46a32ac7fec *R/jerr.R
65abc981c18160e0a229da5225aeb812 *R/jerr.coxnet.R
5acd474cede565ec9bff39674d9cdac0 *R/jerr.elnet.R
0ee642ef97444c8b0c05b43face38094 *R/jerr.fishnet.R
cb426164b68fd511d50afddd54af550f *R/jerr.lognet.R
955ddc9c91f5cb11e10bce2feb17b4aa *R/jerr.mrelnet.R
2448cfc1a8d2d38e7e3289b2af7b5600 *R/lambda.interp.R
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f592404f1a0c942773d88cf99ad9494d *R/mrelnet.R
17d20a46471df38f1d1c6bb7cb16421a *R/na.mean.R
bf3efdbf2db4c0e5008b8f312e27c374 *R/nonzeroCoef.R
47c7b014ce112b5eae37781f6a8c2ee4 *R/onAttach.R
4e298caa6bf66d054c37d50f667be783 *R/pb.R
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02071fdcb15f4af0ea0b15d66fd07e6a *R/plot.cv.relaxed.R
82efd434c7bdd04ddb38aeb45305e171 *R/plot.glmnet.R
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9a7b40a45d986ba0ad218cdb8fbec84e *R/plot.multnet.R
16cd799e2f0ccc810fe4e8f0d0e2768b *R/plot.relaxed.R
89ab229593725acc8f5573ecfcd75bd7 *R/plotCoef.R
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8ebf91d9c99794830d1b902ed3907677 *R/predict.cv.glmnet.R
46ef747bea2ff68cef5ef2ffbb5bb466 *R/predict.cv.relaxed.R
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a8df4be6783b23ff12c673269dce31c2 *R/predict.glmnet.R
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1bc0c68ce624df57b07bdabfd1e84597 *R/predict.mrelnet.R
527281caaebab2d24176f258f7ccf5ee *R/predict.multnet.R
ed58f90aa0b7d7a5ead21c0838d5b330 *R/predict.relaxed.R
70cd43e9955641d2041c50030491a921 *R/print.bigGlm.R
db093ef96748c43424e48993e2c23b0c *R/print.confusion.table.R
33d0f53e0210a76bcc6d6372b7a7577b *R/print.cv.glmnet.R
f57e0561181a529df64e8b15133a0f2b *R/print.cv.relaxed.R
85eea47cfd8403a66297ea317bad0be3 *R/print.glmnet.R
bd2ec5c2c0bd0912b718e59d58683a57 *R/relax.glmnet.R
2f4e93765a4a22bb2dac4b22b984d22f *R/response.coxnet.R
b012181c241a4f6699d73f63bec2bd1d *R/rmult.R
533da5bd46d7fed918af5a04b1539d6c *R/roc.glmnet.R
732890f5e88bddcd5b331928863c8d27 *R/stratifySurv.R
e44a2d10d5135f6931a13542d8996d56 *R/survfit.coxnet.R
e2f22c34e46e1ec2964d1968e7116342 *R/survfit.cv.glmnet.R
0d040824da1ffcd1edb57b252f6b1f6e *R/zeromat.R
b7139e38ec4eb9a38549130e2e53b2d0 *README.md
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
f73a5401bd711216dd3b410fce5dacda *build/vignette.rds
a354146175e4fd9302cef01e9f8dcd6f *cleanup
0814c5a080c9ba7874362051b6cbd89f *data/BinomialExample.rda
7a404bc6a255ac95a6cc06cf4fe6ddbf *data/CVXResults.RData
9497636bb0edb7f76c792f33c47ba681 *data/CoxExample.rda
a72ec47b364e0eb3a85fc2d402c7ac16 *data/MultiGaussianExample.rda
892fa8ad5b2ff24f9c989ebcec41bfb8 *data/MultinomialExample.rda
cac6b8e217715098a5ee94e4066c1a4b *data/PoissonExample.rda
35754bd4878bc234696cc2d9b880d90e *data/QuickStartExample.rda
54067bd791ff172cff97ff9d26b6de12 *data/SparseExample.rda
fd5aa84f9a0b2bcdec1a75ca13a03b2b *inst/CITATION
f23a3ae43949575044e47de3e51e2e5e *inst/doc/Coxnet.R
a7a641e6a40e04ff9761d26fbf3e19f4 *inst/doc/Coxnet.Rmd
6deee1272c721eb2b879777c874817a0 *inst/doc/Coxnet.pdf
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a23aeceac29ddaa7d59a05f804f8105e *inst/doc/glmnet-history.R
81524b02ea328e9217ccec075469ba24 *inst/doc/glmnet-history.Rmd
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43a50114a802191d45550a0d6b063a91 *inst/doc/glmnet.pdf
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3f1fef692a1ee222e55fd8cb0c7045d5 *inst/doc/glmnetFamily.pdf
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7e55dc068ca8e71882079a2a86625b46 *inst/doc/relax.pdf
64c471277309951b4697ffdd1ee15fb8 *inst/mortran/README.Rmd
105f4c45761aea898c3ecb428b4f2d88 *inst/mortran/coxnet5dpclean.m
6e03129049a39674c7ea15de8339511d *man/BinomialExample.Rd
5a4389a6279bf8f6db41b6c7c5862bf9 *man/Cindex.Rd
9f14f46f2d349831ddf8fd8958bf69ef *man/CoxExample.Rd
e472e3fbbaa3c1286891a59a561123ad *man/MultiGaussianExample.Rd
2023e16a435a534ce184ddbb01a04bb7 *man/MultinomialExample.Rd
287fe75c09580f4475f97e6a4653a2ca *man/PoissonExample.Rd
81a89d362e387093991343cbbe045fce *man/QuickStartExample.Rd
d9cb26ef685c853112acfa17afee001f *man/SparseExample.Rd
db803cacf2e2783af427a53ae29000de *man/assess.glmnet.Rd
404ddf86d813ed00f2ddfaf0cc88bf5f *man/beta_CVX.Rd
413f29637810f0c84718ca2f5bb00ab1 *man/bigGlm.Rd
1ffddb919ba4decb4254b9e7e9b22fb6 *man/coxgrad.Rd
81798682c97168d55efe49a976d62bde *man/coxnet.Rd
11eb44c2e246da855958b8a1644c9d51 *man/coxnet.deviance.Rd
c407ae38b61f28cd23ee78f85f1dfd78 *man/cv.glmnet.Rd
18d78ba828a20778f74374075a832d81 *man/dev_function.Rd
9ade2a133f3c6e4049a766a561a05145 *man/deviance.glmnet.Rd
637962b6da6f441ddf882bc26202fefd *man/elnet.fit.Rd
2604c132d7a0c60ba0bb2842687b9aaf *man/fid.Rd
282c6f7db8fc51844dc28629a8b1e261 *man/get_eta.Rd
1e9b7d5537b29ef0a4c097e26e0fb2a7 *man/get_start.Rd
5741ee2b018611ca87549cb4eedaafa9 *man/glmnet-internal.Rd
ed53eeaff465ba88ad87e207bdd27a5a *man/glmnet-package.Rd
738c70cfcf1c173588da7172520b33af *man/glmnet.Rd
a3abfedc00bcccee200a141aec8568c5 *man/glmnet.control.Rd
1bad688958a0711845c01061ed51297a *man/glmnet.fit.Rd
5100041a8bdf7a926cc199587f99d2e5 *man/glmnet.measures.Rd
2323de5319f939744fa9c27ac0f5e48a *man/glmnet.path.Rd
a58741a0f8c88395ad8a12d3afc84cae *man/makeX.Rd
450ff2e96f274536ed5c1c7ae2b15478 *man/mycoxph.Rd
751f3230c6220d30f9e428ff985dc9c9 *man/mycoxpred.Rd
8e5d2c806cb13cc2b06207f68a31eba9 *man/na.replace.Rd
8ac2ff867e5e3c5fed650e9ba7fae90f *man/obj_function.Rd
64f275140d08ca77bde537001a99564d *man/pen_function.Rd
70fa12f348b7b710a3ce7c0486fc5458 *man/plot.cv.glmnet.Rd
83381d0d734624b62205264376636bc7 *man/plot.glmnet.Rd
6b05f3475ab9229e756ed2b9912ad553 *man/predict.cv.glmnet.Rd
48071c7377f8c310ae48c44a27df5893 *man/predict.glmnet.Rd
c94db387bc9bcc16d607294a3a3f50b6 *man/predict.glmnetfit.Rd
8e4be7a110c2b05437a16f7282d01de0 *man/print.cv.glmnet.Rd
3f6f703e63011a228505e5db088aa645 *man/print.glmnet.Rd
e4c08beafea3fe0967fe62702d6df665 *man/response.coxnet.Rd
3adbd56c4685f732227a9845b470aeb8 *man/rmult.Rd
a62678b3f19900ec74d299d7eebafbd7 *man/stratifySurv.Rd
25bf7abec92edfb4312fa50c0a1ebc66 *man/survfit.coxnet.Rd
f2447246ed1bc0682526b694b2ff1daa *man/survfit.cv.glmnet.Rd
ef3f52f020e0348152d26890bb7e717e *man/weighted_mean_sd.Rd
d739f697f40401860b0d41ae1f6c2268 *src/Makevars
2a361fef357db7651c1350a9c789c28c *src/RcppExports.cpp
b805fc193187d3187d25b063932381fb *src/cox_test_utils.cpp
c659bb7fe2fc3c5bfc097e99d1109ffa *src/driver.h
c855a27db7c1a12a5e4a8de9a88d7649 *src/elnet_exp.cpp
991f354906034e31ca6d571055eaa859 *src/glmnet_control.cpp
2cd9dca5aeeb11738ab02b2bd90e8204 *src/glmnet_init.cpp
92b8a4bc1639e29d26b12bb58cedaeb6 *src/glmnetpp/coxdev/cpp/include/coxdev.h
a1a40774e52ce2c65ae7bd2c67cc3f93 *src/glmnetpp/coxdev/cpp/src/coxdev.cpp
6a0773b65da6e07f8a3e6938347d3fdd *src/glmnetpp/include/glmnetpp
be95e1bacdad999ba99636525f983723 *src/glmnetpp/include/glmnetpp_bits/elnet_driver.hpp
ad3045077221b078f7cc776b6a73cbae *src/glmnetpp/include/glmnetpp_bits/elnet_driver/base.hpp
5ce01db3315712c2bac63aef6096bc1f *src/glmnetpp/include/glmnetpp_bits/elnet_driver/binomial.hpp
053b4b6434235b59f4da7810d23b1a3a *src/glmnetpp/include/glmnetpp_bits/elnet_driver/chkvars.hpp
3d4fc77b32b6091b5d649b237705b09e *src/glmnetpp/include/glmnetpp_bits/elnet_driver/cox.hpp
6e4b77e5ee6bca73740cc5d08d0f0d49 *src/glmnetpp/include/glmnetpp_bits/elnet_driver/decl.hpp
ef9e8f1469bac9839008be1b8d196b34 *src/glmnetpp/include/glmnetpp_bits/elnet_driver/gaussian.hpp
b449db430973b549218cf34b0ac7b1b2 *src/glmnetpp/include/glmnetpp_bits/elnet_driver/poisson.hpp
a8abe7597ab2f395499c3d099526258b *src/glmnetpp/include/glmnetpp_bits/elnet_driver/standardize.hpp
cb37d7a32d228b4ea2e7f4658cf9beb7 *src/glmnetpp/include/glmnetpp_bits/elnet_path.hpp
6188c58fc930a1b688ac2a981de34f03 *src/glmnetpp/include/glmnetpp_bits/elnet_path/base.hpp
67fbbade20bafda83b7c32a1fb16f1df *src/glmnetpp/include/glmnetpp_bits/elnet_path/binomial_base.hpp
130ac2f957c06f476c8b44f6e05f7221 *src/glmnetpp/include/glmnetpp_bits/elnet_path/binomial_multi_class.hpp
170b8a1afc445cd2df3492a1affb07c9 *src/glmnetpp/include/glmnetpp_bits/elnet_path/binomial_multi_class_group.hpp
bbb04cb2bed107f3073e6825ce3fed3e *src/glmnetpp/include/glmnetpp_bits/elnet_path/binomial_two_class.hpp
19bd0a113249e317856b3b4597f40ef4 *src/glmnetpp/include/glmnetpp_bits/elnet_path/cox_base.hpp
9a70b66835b6edff514f433ea916b526 *src/glmnetpp/include/glmnetpp_bits/elnet_path/cox_naive.hpp
6568fe66ff1929a5e8c890d590e270da *src/glmnetpp/include/glmnetpp_bits/elnet_path/decl.hpp
d1b95b53c4e7c9970da914cf3c7c3aa1 *src/glmnetpp/include/glmnetpp_bits/elnet_path/gaussian_base.hpp
612be914a470b47a70198c2c02270e4b *src/glmnetpp/include/glmnetpp_bits/elnet_path/gaussian_cov.hpp
af8f9fc3c5c37873fadd865ed63fce22 *src/glmnetpp/include/glmnetpp_bits/elnet_path/gaussian_multi.hpp
7975c1b3756970c9a6cc8d436bb873b8 *src/glmnetpp/include/glmnetpp_bits/elnet_path/gaussian_naive.hpp
1f132b71a52b59fa34e85e27541a9dfa *src/glmnetpp/include/glmnetpp_bits/elnet_path/poisson_base.hpp
a55d5f55541fa8312672eda576621612 *src/glmnetpp/include/glmnetpp_bits/elnet_path/poisson_naive.hpp
3c4952935f025081f762122384ea94fa *src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_binomial_multi_class.hpp
d06802688d2e21d49a771f41f0aa818f *src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_binomial_multi_class_group.hpp
939a351213b819797ed7db9a0b4d165b *src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_binomial_two_class.hpp
4c21fd77068b870e9241a17e3ba07f18 *src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_cox_naive.hpp
8b3bf095b16b4d1bd31468ddae83790d *src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_gaussian_cov.hpp
d3ef65b1cf50ffabe8440852b131d70b *src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_gaussian_multi.hpp
46cf9d84fdb98dd13b1a103f1ac4bcd0 *src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_gaussian_naive.hpp
27325604b8a4880e4b50fde699fa944b *src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_poisson_naive.hpp
1db7ad017149ce569edd7dd254527a51 *src/glmnetpp/include/glmnetpp_bits/elnet_point.hpp
a2200ac93f34e286e6dcdb46659815f8 *src/glmnetpp/include/glmnetpp_bits/elnet_point/base.hpp
80766ce65a343bdf1b88e14d59b30de2 *src/glmnetpp/include/glmnetpp_bits/elnet_point/binomial_base.hpp
9540cc2436b3b9d073f3d81bba3cb374 *src/glmnetpp/include/glmnetpp_bits/elnet_point/binomial_multi_class.hpp
61b3d89118f696da703c4e0115886849 *src/glmnetpp/include/glmnetpp_bits/elnet_point/binomial_multi_class_group.hpp
d6d83d29ca60f1c3446e00afe5c82b90 *src/glmnetpp/include/glmnetpp_bits/elnet_point/binomial_two_class.hpp
07ba21bfd9940bd2177786b87fe5a615 *src/glmnetpp/include/glmnetpp_bits/elnet_point/cox_base.hpp
10dd7600b3f05d5b8406ace4237e87b1 *src/glmnetpp/include/glmnetpp_bits/elnet_point/cox_naive.hpp
382e81f1a3a5547c1279ac6582364f11 *src/glmnetpp/include/glmnetpp_bits/elnet_point/decl.hpp
02850d5432085c64bfc0b778efc6955d *src/glmnetpp/include/glmnetpp_bits/elnet_point/gaussian_base.hpp
db90543bcd0931aefaba6a676536d936 *src/glmnetpp/include/glmnetpp_bits/elnet_point/gaussian_cov.hpp
a2a3772e65baac85b08183894467c6b4 *src/glmnetpp/include/glmnetpp_bits/elnet_point/gaussian_multi.hpp
67ec74ea051e704e99e1a46fcbeceb63 *src/glmnetpp/include/glmnetpp_bits/elnet_point/gaussian_naive.hpp
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