49632b011c9fd7c8f12a1b07e5f23a3c *DESCRIPTION
43787311dc8e63a9bff3d64ca552f57d *LICENSE
7bf3039f8721e329241016f98c49e58f *NAMESPACE
89064407b14d847404394dda73ce23b9 *NEWS.md
10c2ca5ffb149198e4224ec9c3e54ad9 *R/alias_maps.R
3e4f8c3fc1bd41ac457edde7bdbf23c9 *R/dna_tools.R
f3c231acd0301511447b2584b4f45f2c *R/ggDNAvis-package.R
da51d35ad19012983d7db92a0d4cc357 *R/merge_with_metadata.R
77efac3cae2adf966246ce4ef0b3dc0e *R/parse_methylation_from_fastq.R
40913f7b8a58ca0c4a41e94635aba6f6 *R/visualise_many_sequences.R
b8c04e1a4074a0692662e449805b1a22 *R/visualise_methylation.R
ef0932db09aa9220e93002981db649e7 *R/visualise_single_sequence.R
5e7260c88f88514ef1377bac87a3ca6e *R/zzz.R
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
09a8506677b6881d19047aaf9abaa90c *build/vignette.rds
9a7cba4d738278cc37329206d7b67055 *data/example_many_sequences.rda
2165725f15128029b7c74f1a57390d5c *data/fastq_quality_scores.rda
4c1ac463e02d6fea007999302b85cab0 *data/sequence_col_palettes.rda
e3000399cc9f4e7f6f925aceb801b4de *data/sequence_color_palettes.rda
230f2bc47a1f8b65190ff3246d3dc676 *data/sequence_colour_palettes.rda
ae92e1c4c36bdd0cd9e64de64a9e1b60 *inst/CITATION
5e270ae6034b339c2a13d20a5f7d2dec *inst/doc/interactive_app.R
dde125d98c1c75a0f03383b6f2e1e465 *inst/doc/interactive_app.Rmd
80c4ea5ec7f1d62492d068a29fa23a40 *inst/doc/interactive_app.html
a0a05670a9737e26f880309827d20c87 *inst/extdata/example_many_sequences_metadata.csv
de725dda3c65f606277129d4771d8048 *inst/extdata/example_many_sequences_raw.fastq
56bf0ec0f120cc923856ef354e345458 *inst/extdata/example_many_sequences_raw_modified.fastq
b95e857f820abbd5a66685207c6c63b1 *inst/shinyapp/app.R
3c1fc0d685038f94fa23391bc0c29f5b *inst/shinyapp/create_manifest.R
d9b75f4d5f26b906696bba913b23090f *inst/shinyapp/help/instructions.md
15c9c895f2b663bed81f3edc203fd821 *inst/shinyapp/help/instructions_bottom.md
50b2afa99e5a7c46ede5e4d98afada8f *inst/shinyapp/help/links.md
28e1490e1697dcd775b2bec5468b3682 *inst/shinyapp/help/popup_methylation_clamping_details.md
329bf9cc0edba93241e8b472fa8c6c28 *inst/shinyapp/help/popup_methylation_input_details.md
ac91fd6fb5c80cccc80d8e97d5c5339b *inst/shinyapp/help/popup_methylation_offset_details.md
5e418cfc1a0f1795dd90f7650686a6e5 *inst/shinyapp/help/popup_methylation_scaling_details.md
c0a0fa5af8833c1b2c7cc31b63e6e8d4 *inst/shinyapp/help/popup_methylation_upload_details.md
f2aa3bfbe518b605721c274c969f7d98 *inst/shinyapp/help/popup_multiple_header_details.md
2df653a5877fd35b8449e57eb7ce6b16 *inst/shinyapp/help/popup_multiple_input_details.md
8271b57661632b92aedd062481d4969d *inst/shinyapp/help/popup_multiple_upload_details.md
27bae14cde58c1aa13a56f3f15c631eb *inst/shinyapp/help/popup_single_upload_details.md
f65fde3e783dc4fe62751e0e6681b963 *inst/shinyapp/helpers.R
ff45cbdd748f773d0f98ad2f3bb2968d *inst/shinyapp/mod_visualise_many_sequences.R
c438f415520e376f411fd0183154ed1e *inst/shinyapp/mod_visualise_methylation.R
7a3693dca6713277af05149164f30729 *inst/shinyapp/mod_visualise_single_sequence.R
58a0e0969b77d627718c57df5840e41c *man/bad_arg.Rd
c4a47055c0a2feb2ef7575bff7f566e0 *man/convert_MM_vector_to_locations.Rd
c972c0b058340a20578894bfe9f0cc4f *man/convert_base_to_number.Rd
df38912e9e2d2485c366842cda0a9091 *man/convert_locations_to_MM_vector.Rd
e378af5dfefb31ebec46f78684e3757b *man/convert_modification_to_number_vector.Rd
7b189d88a37be81c181c23f96bdd3615 *man/convert_sequence_to_numbers.Rd
b3e79307fcac774db444af86d7467fa9 *man/convert_sequences_to_matrix.Rd
25c12fcafab196cd59e534f4f8bab601 *man/create_image_data.Rd
9a84ebbad0ebe79f37b48d9976c21451 *man/debug_join_vector_num.Rd
e505827b20ce8ded90d534fdfc13277d *man/debug_join_vector_str.Rd
903707562ae4d1da8b6a7f1ba529ab2a *man/example_many_sequences.Rd
59821fd73473e5b89ac0636afb2bf9f3 *man/extract_and_sort_methylation.Rd
a8140aadf8393b8a73259de3fcf5ec02 *man/extract_and_sort_sequences.Rd
de5169775468cd1d6b11c4e65aac55dc *man/fastq_quality_scores.Rd
0fb2a4960ceed805b811cae20326e762 *man/figures/ggDNAvis.png
d3370c218a3290ee08ba93273130ee5f *man/figures/ggDNAvis_detailed.png
0ef9d32dfd3afa9df2099baa07d843cc *man/figures/ggDNAvis_medium.png
501e7d25f1f8e90f2f2c26246cb4abbf *man/figures/ggDNAvis_simple.png
cf904d84d345bf2b6ad230ddd7288a2a *man/figures/ggDNAvis_sticker.R
d3370c218a3290ee08ba93273130ee5f *man/figures/logo.png
62b43205134095e09603d7a3a133b6e6 *man/figures/many_sequences_for_sticker_detailed.png
0b31c8a7b642b3f741fd2a460a04dc4e *man/figures/many_sequences_for_sticker_medium.png
2426dfaa0c841caa2b27ba116ecf7eab *man/figures/many_sequences_for_sticker_simple.png
047e511b2c911717f82cc89b331f08ff *man/format_time_diff.Rd
e42c176ecec70758dcaf8641c05e549e *man/ggDNAvis-package.Rd
418512294b6a741e2fab2ce95091c3bf *man/ggDNAvis_aliases.Rd
1d023ec97e63fd410f4e5d01d38999c1 *man/ggDNAvis_shinyapp.Rd
c6ec5cf49fe18f59ccd7b8d3ec2d42fc *man/insert_at_indices.Rd
251809ea1a115ddf23688ed093a755a3 *man/merge_fastq_with_metadata.Rd
d7cb4e1df74e6989e19e8cc58d2098bc *man/merge_methylation_with_metadata.Rd
9a3a43c6832171b71b9a2edb6c64cab3 *man/monitor.Rd
7135646178216554b723484fe115a513 *man/monitor_start.Rd
4558e0a892c753260e017c2315bf8f50 *man/rasterise_index_annotations.Rd
829ffb3950dc642c671d28ea7520c60b *man/rasterise_matrix.Rd
f6b53fb7ac9a6abd65bfdf68a83508b5 *man/rasterise_probabilities.Rd
acc2109af47bcb0ada077309faac3377 *man/read_fastq.Rd
a599198e3bab65b513b64f27cc73cdff *man/read_modified_fastq.Rd
1d60b5945a751e5d908db5c149cbdbc3 *man/resolve_alias.Rd
e001873ca25ab5e329a598872db2c944 *man/resolve_alias_map.Rd
e1aa7be38570c06d5b8e578797bfce94 *man/reverse_complement.Rd
dbd691f9dccac84acd85c3349c4ef3f0 *man/reverse_locations_if_needed.Rd
087caae7a2de4f19db30621527ca55c2 *man/reverse_probabilities_if_needed.Rd
c9a6da64b2ce81c45353002a46d0f0ca *man/reverse_quality_if_needed.Rd
26f1d0fbafad820cdb9ccd47fd9b6730 *man/reverse_sequence_if_needed.Rd
841ae551854d147e12f721fc950e5a71 *man/sequence_colour_palettes.Rd
fa42c77b06afb0957181f030e3b65afd *man/string_to_vector.Rd
88e562f1d37fa5e6da3ff634ea03741b *man/strip_leading_at.Rd
30f336923ef107b6d30456dadb12b329 *man/vector_to_string.Rd
c89ce3f67fce963623a128fcf95d3619 *man/visualise_many_sequences.Rd
9f88d3afd077bed354d0c5ff94d62619 *man/visualise_methylation.Rd
4bf46fe1035b62d462f0340b6d133b06 *man/visualise_methylation_colour_scale.Rd
c55c2a20094890529f7f2d07e055fc33 *man/visualise_single_sequence.Rd
c968b6e98e0cdcfe7a20db87cb872c9f *man/write_fastq.Rd
f74e322545a79eca787cf7f6a99e88ee *man/write_modified_fastq.Rd
e59a0acef21f27313dcbd2c6f1bbc955 *tests/testthat.R
aba64eb7f5c339bc31ddbbafb4467243 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_01.png
8ea3e9ee878a6ffcab335e04555752f3 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_02.png
fba7e2bf24532f522ea6cede2cbd967d *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_03.png
fba7e2bf24532f522ea6cede2cbd967d *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_04.png
57d21bd5f4bf6e7d3539004ae32967f7 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_05.png
87ddfc95c5239bbfe2d43c5265dfe0b1 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_06.png
238b129429b66160d1ba2356959e3f24 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_07.pNg
8d6b31e80ca94c1c04fd2371a4530a73 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_08.png
dcdc052ba59a4ce0eb26982a0cb422c4 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_09.jpg
859a3aa651a0af63b74f3c3cb60e1cfd *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_10.jpg
4e97188268a050de5c2bc5a082068c81 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_11.PNG
4e97188268a050de5c2bc5a082068c81 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_12.PNG
7e23648d00d21385d817ae2bec900ea0 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_13.PNG
7e23648d00d21385d817ae2bec900ea0 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_14.PNG
eb70bae78d032f4f19b0737c874acc5c *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_15.png
85b6c027765d5aba69a935ce743572d0 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_16.png
4e97188268a050de5c2bc5a082068c81 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_17.png
c13a1026a96be1c17ec0893f5b773c45 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_18.png
96fe27de086d92e090be14015ad351b8 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_19.png
2125c07024178159d30be678181e8e7c *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_20.png
abb012ef198d9bc48c46ba439c9c257b *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_21.png
7d80d3fa38451432c95c7b17cc4309c8 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_22.png
a48e7827e9d8f754b4088e99bbcfb984 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_23.png
0c09d629070d38bd5135c280826cc2c1 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_24.png
ab433c468dcba7a1e0cfd0248693eaa5 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_25.png
21ad60b2bb1d0ed9b268c27b37783a66 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_26.png
1d04f1cfaa49ca5c3b830a6d9da5198c *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_27.png
9b6dd7e0dab6b8d5d672a4992e76e057 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_28.png
06aff6a3a26a92723795631f859d37c7 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_29.png
d65bcce5f9c278ca0eea3f9b1819b47a *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_30.png
88cd8e551052bf6c302c04ba43c0d136 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_31.png
7855ec574a2398d03b7d2e7e2a58d35f *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_32.png
05c195a8962c74c19e9b9d9d30cbfb60 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_33.png
38541c79efe80a0395856df7e830eda1 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_34.png
7855ec574a2398d03b7d2e7e2a58d35f *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_35.png
a4bc4d138026d5698d9010a7e20d1412 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_36.png
d6b87047007270e42744bc8db0dff0f2 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_37.png
38541c79efe80a0395856df7e830eda1 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_38.png
34cb6ad9eff09215debe879917bb9037 *tests/testthat/reference_images/sone_2019_f1_1_expanded_test_39.png
4d651481383963fcd1fba87526385d0b *tests/testthat/reference_images/visualise_many_sequences_test_01.png
230376a5a7359cbc28400602fc62f4b8 *tests/testthat/reference_images/visualise_many_sequences_test_02.png
73fd9417ae9db37a5f4360b6d3bf80d6 *tests/testthat/reference_images/visualise_many_sequences_test_03.png
803811cc2018edbc7d5ee0d32419afe2 *tests/testthat/reference_images/visualise_many_sequences_test_04.png
d9fa69f47657c201451bd15d2e880821 *tests/testthat/reference_images/visualise_many_sequences_test_05.png
25e54602142e6e677df128a2dab0aee8 *tests/testthat/reference_images/visualise_many_sequences_test_06.png
2e13d26d46f4af383dd6de967e30b60e *tests/testthat/reference_images/visualise_many_sequences_test_07.png
b92a1f922dc3119df80d542023a2a384 *tests/testthat/reference_images/visualise_many_sequences_test_08.png
08cec0d2cbc6d52ad6174aa5a49c9d46 *tests/testthat/reference_images/visualise_many_sequences_test_09.png
5af3fa172d809309982a5bacb5ee4c3e *tests/testthat/reference_images/visualise_many_sequences_test_10.png
26bf7fc8b056c1b7461ce13ee28112f2 *tests/testthat/reference_images/visualise_many_sequences_test_11.png
6d24c8c9a674cf2fdb68e49499ec6d13 *tests/testthat/reference_images/visualise_many_sequences_test_12.png
ffc05c9c8c7f77fcc512d028a2f5fc7e *tests/testthat/reference_images/visualise_many_sequences_test_13.png
8e1759a1dec840429850ffb1b1506a2e *tests/testthat/reference_images/visualise_many_sequences_test_14.png
39d2738cae1d1d5856b5546abad9e518 *tests/testthat/reference_images/visualise_many_sequences_test_15.png
b422e448b00fcf98b05e4ec27f771e25 *tests/testthat/reference_images/visualise_many_sequences_test_16.png
91f889cc5a7274d9572246a82572daff *tests/testthat/reference_images/visualise_many_sequences_test_17.png
f55d16fa175600c813902fab4347a7ab *tests/testthat/reference_images/visualise_many_sequences_test_18.png
baf5b594e1be5f4cf2fc3ddfdba3981d *tests/testthat/reference_images/visualise_many_sequences_test_19.png
8a90bb71f51e6d0a1b52ddc7d46d043f *tests/testthat/reference_images/visualise_many_sequences_test_20.png
e2b2b0188dc892289298f6a0d27d75a3 *tests/testthat/reference_images/visualise_many_sequences_test_21.png
0c33027aea02be45dff1fe6b175b0829 *tests/testthat/reference_images/visualise_many_sequences_test_22.png
148eddbf99b9f32a62842d3a18cbb6b8 *tests/testthat/reference_images/visualise_many_sequences_test_23.png
1172ebe08b0e0d398a77a093df712457 *tests/testthat/reference_images/visualise_many_sequences_test_24.png
9f154c88a6ded5bdad8c3f7a65c20c28 *tests/testthat/reference_images/visualise_many_sequences_test_25.png
1b5585a1dd14be6c422a8beec6c14559 *tests/testthat/reference_images/visualise_many_sequences_test_26.png
20fe346a852e8924dad3667ede788a74 *tests/testthat/reference_images/visualise_many_sequences_test_27.png
d4cd7e465e5efa58d3c5802c350ed5ac *tests/testthat/reference_images/visualise_many_sequences_test_28.png
fbd3b0cd21ab789ef4f7bea8b0ee7561 *tests/testthat/reference_images/visualise_methylation_scalebar_test_03.png
77f84f866b1dba3039f5ca7ed2c29e5a *tests/testthat/reference_images/visualise_methylation_scalebar_test_04.png
ce2a0760aef24e5590bcb9b8c5503d3d *tests/testthat/reference_images/visualise_methylation_scalebar_test_05.png
f737e587f2fab3a786583414fd9e107e *tests/testthat/reference_images/visualise_methylation_test_01.png
a39443c27193d466e45e5bcad923bad6 *tests/testthat/reference_images/visualise_methylation_test_02.png
4ceb47a670530ced914f64af3781ace6 *tests/testthat/reference_images/visualise_methylation_test_03.png
254aaa88b09ed4d0321b95fec06941ce *tests/testthat/reference_images/visualise_methylation_test_04.png
0a596983a887560e605b783195f4fa99 *tests/testthat/reference_images/visualise_methylation_test_05.png
d5129a8d1afcd42287f12e82a96eab0a *tests/testthat/reference_images/visualise_methylation_test_06.png
804b759af71d8d91e595a699bb7b91b9 *tests/testthat/reference_images/visualise_methylation_test_07.png
a7a2cc792b027cd45e4577107b7e48e7 *tests/testthat/reference_images/visualise_methylation_test_08.png
a3128dde7c89f2c223fe70d763e7bc4d *tests/testthat/reference_images/visualise_methylation_test_09.png
9b10ea2b8aeac682c7bcd05a06b2a898 *tests/testthat/reference_images/visualise_methylation_test_10.png
3989f9c9b58f8f7bec2a1251875f0592 *tests/testthat/reference_images/visualise_methylation_test_11.png
94e8d31fb3652e878b5201331e320e0f *tests/testthat/reference_images/visualise_methylation_test_12.png
90ced7ac0e0a2729d82cf81feb0fe408 *tests/testthat/reference_images/visualise_methylation_test_13.png
168b0574339a2a6e0dbb8bbf04a238ab *tests/testthat/reference_images/visualise_methylation_test_14.png
5d286ae03871bc8084fa87f4340d86b7 *tests/testthat/reference_images/visualise_methylation_test_15.png
f02af4e77590053a2a07c8f2c8a3ac93 *tests/testthat/reference_images/visualise_methylation_test_16.png
95a26addd917db0e966283b012e6898c *tests/testthat/reference_images/visualise_methylation_test_17.png
f43170fddeea6ce5544838e6f9d1e67e *tests/testthat/reference_images/visualise_methylation_test_18.png
9e72b763ff538ed1754429d365b7c1e6 *tests/testthat/reference_images/visualise_methylation_test_19.png
809f029446e69eef6991b2a9b59742be *tests/testthat/reference_images/visualise_methylation_test_20.png
2ece9a8658453a9ad7f9dc89fb129ca9 *tests/testthat/reference_images/visualise_methylation_test_21.png
8882525bba0faeabc1df5a0b1f6cdb3d *tests/testthat/reference_images/visualise_methylation_test_22.png
bc77e8d26283882a6d19f969db046cff *tests/testthat/reference_images/visualise_methylation_test_23.png
010cf569bd3309df981fd7a9bd55640f *tests/testthat/reference_images/visualise_methylation_test_24.png
c86108c96bca8ebf1a02c51c94653a3e *tests/testthat/reference_output_data/example_many_sequences.fastq
a4e81e78ab14dd9822865e988317a771 *tests/testthat/reference_output_data/example_many_sequences_altered_modification.fastq
65cd0736f2bff9833d4e7d258c371bb2 *tests/testthat/reference_output_data/example_many_sequences_altered_with_blank_tags.fastq
efcba2d8caa7088fd29bac0109117806 *tests/testthat/reference_output_data/example_many_sequences_c+m_no_question.fastq
56bf0ec0f120cc923856ef354e345458 *tests/testthat/reference_output_data/example_many_sequences_directional.fastq
a0a05670a9737e26f880309827d20c87 *tests/testthat/reference_output_data/example_many_sequences_metadata.csv
f7df68f842132f450e55f9c247ef964c *tests/testthat/reference_output_data/example_many_sequences_no_quality.fastq
fc593ebfc1f0487dfd92fb1e68f14914 *tests/testthat/reference_output_data/example_many_sequences_unmodified.fastq
de725dda3c65f606277129d4771d8048 *tests/testthat/reference_output_data/example_many_sequences_unmodified_directional.fastq
c605372cfd30f953d90a027d55c5e2ee *tests/testthat/reference_output_data/example_many_sequences_unmodified_no_quality.fastq
e81d86ae30e076a5d0ce0be778b6f639 *tests/testthat/test-dna_tools.R
cef27f23316e4c81a2e34a81fcafd991 *tests/testthat/test-merge_with_metadata.R
696a5096993c227cddda028a38c683ce *tests/testthat/test-parse_methylation_from_fastq.R
493365e2672021f0a82c96d72c923924 *tests/testthat/test-visualise_many_sequences.R
bcdb6950c5225e720e9fff05911dcc2d *tests/testthat/test-visualise_methylation.R
424347753aa3d1c6628c1914b8aac021 *tests/testthat/test-visualise_single_sequence.R
ea3592d1912699d077c54599ddd14e0b *tests/testthat/test-zzz.R
c86108c96bca8ebf1a02c51c94653a3e *tests/testthat/test_output_data/example_many_sequences.fastq
a4e81e78ab14dd9822865e988317a771 *tests/testthat/test_output_data/example_many_sequences_altered_modification.fastq
65cd0736f2bff9833d4e7d258c371bb2 *tests/testthat/test_output_data/example_many_sequences_altered_with_blank_tags.fastq
efcba2d8caa7088fd29bac0109117806 *tests/testthat/test_output_data/example_many_sequences_c+m_no_question.fastq
56bf0ec0f120cc923856ef354e345458 *tests/testthat/test_output_data/example_many_sequences_directional.fastq
f7df68f842132f450e55f9c247ef964c *tests/testthat/test_output_data/example_many_sequences_no_quality.fastq
fc593ebfc1f0487dfd92fb1e68f14914 *tests/testthat/test_output_data/example_many_sequences_unmodified.fastq
de725dda3c65f606277129d4771d8048 *tests/testthat/test_output_data/example_many_sequences_unmodified_directional.fastq
c605372cfd30f953d90a027d55c5e2ee *tests/testthat/test_output_data/example_many_sequences_unmodified_no_quality.fastq
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/test_output_data/keep.txt
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/test_plot_images/keep.txt
aba64eb7f5c339bc31ddbbafb4467243 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_01.png
8ea3e9ee878a6ffcab335e04555752f3 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_02.png
fba7e2bf24532f522ea6cede2cbd967d *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_03.png
fba7e2bf24532f522ea6cede2cbd967d *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_04.png
57d21bd5f4bf6e7d3539004ae32967f7 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_05.png
87ddfc95c5239bbfe2d43c5265dfe0b1 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_06.png
238b129429b66160d1ba2356959e3f24 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_07.pNg
8d6b31e80ca94c1c04fd2371a4530a73 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_08.png
dcdc052ba59a4ce0eb26982a0cb422c4 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_09.jpg
859a3aa651a0af63b74f3c3cb60e1cfd *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_10.jpg
4e97188268a050de5c2bc5a082068c81 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_11.PNG
4e97188268a050de5c2bc5a082068c81 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_12.PNG
7e23648d00d21385d817ae2bec900ea0 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_13.PNG
7e23648d00d21385d817ae2bec900ea0 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_14.PNG
eb70bae78d032f4f19b0737c874acc5c *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_15.png
85b6c027765d5aba69a935ce743572d0 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_16.png
4e97188268a050de5c2bc5a082068c81 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_17.png
c13a1026a96be1c17ec0893f5b773c45 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_18.png
96fe27de086d92e090be14015ad351b8 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_19.png
2125c07024178159d30be678181e8e7c *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_20.png
abb012ef198d9bc48c46ba439c9c257b *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_21.png
7d80d3fa38451432c95c7b17cc4309c8 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_22.png
a48e7827e9d8f754b4088e99bbcfb984 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_23.png
0c09d629070d38bd5135c280826cc2c1 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_24.png
ab433c468dcba7a1e0cfd0248693eaa5 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_25.png
21ad60b2bb1d0ed9b268c27b37783a66 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_26.png
1d04f1cfaa49ca5c3b830a6d9da5198c *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_27.png
9b6dd7e0dab6b8d5d672a4992e76e057 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_28.png
06aff6a3a26a92723795631f859d37c7 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_29.png
d65bcce5f9c278ca0eea3f9b1819b47a *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_30.png
88cd8e551052bf6c302c04ba43c0d136 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_31.png
7855ec574a2398d03b7d2e7e2a58d35f *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_32.png
05c195a8962c74c19e9b9d9d30cbfb60 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_33.png
38541c79efe80a0395856df7e830eda1 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_34.png
7855ec574a2398d03b7d2e7e2a58d35f *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_35.png
a4bc4d138026d5698d9010a7e20d1412 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_36.png
d6b87047007270e42744bc8db0dff0f2 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_37.png
38541c79efe80a0395856df7e830eda1 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_38.png
34cb6ad9eff09215debe879917bb9037 *tests/testthat/test_plot_images/sone_2019_f1_1_expanded_test_39.png
4d651481383963fcd1fba87526385d0b *tests/testthat/test_plot_images/visualise_many_sequences_test_01.png
230376a5a7359cbc28400602fc62f4b8 *tests/testthat/test_plot_images/visualise_many_sequences_test_02.png
73fd9417ae9db37a5f4360b6d3bf80d6 *tests/testthat/test_plot_images/visualise_many_sequences_test_03.png
803811cc2018edbc7d5ee0d32419afe2 *tests/testthat/test_plot_images/visualise_many_sequences_test_04.png
d9fa69f47657c201451bd15d2e880821 *tests/testthat/test_plot_images/visualise_many_sequences_test_05.png
25e54602142e6e677df128a2dab0aee8 *tests/testthat/test_plot_images/visualise_many_sequences_test_06.png
2e13d26d46f4af383dd6de967e30b60e *tests/testthat/test_plot_images/visualise_many_sequences_test_07.png
b92a1f922dc3119df80d542023a2a384 *tests/testthat/test_plot_images/visualise_many_sequences_test_08.png
08cec0d2cbc6d52ad6174aa5a49c9d46 *tests/testthat/test_plot_images/visualise_many_sequences_test_09.png
5af3fa172d809309982a5bacb5ee4c3e *tests/testthat/test_plot_images/visualise_many_sequences_test_10.png
26bf7fc8b056c1b7461ce13ee28112f2 *tests/testthat/test_plot_images/visualise_many_sequences_test_11.png
6d24c8c9a674cf2fdb68e49499ec6d13 *tests/testthat/test_plot_images/visualise_many_sequences_test_12.png
ffc05c9c8c7f77fcc512d028a2f5fc7e *tests/testthat/test_plot_images/visualise_many_sequences_test_13.png
8e1759a1dec840429850ffb1b1506a2e *tests/testthat/test_plot_images/visualise_many_sequences_test_14.png
39d2738cae1d1d5856b5546abad9e518 *tests/testthat/test_plot_images/visualise_many_sequences_test_15.png
b422e448b00fcf98b05e4ec27f771e25 *tests/testthat/test_plot_images/visualise_many_sequences_test_16.png
91f889cc5a7274d9572246a82572daff *tests/testthat/test_plot_images/visualise_many_sequences_test_17.png
f55d16fa175600c813902fab4347a7ab *tests/testthat/test_plot_images/visualise_many_sequences_test_18.png
baf5b594e1be5f4cf2fc3ddfdba3981d *tests/testthat/test_plot_images/visualise_many_sequences_test_19.png
8a90bb71f51e6d0a1b52ddc7d46d043f *tests/testthat/test_plot_images/visualise_many_sequences_test_20.png
e2b2b0188dc892289298f6a0d27d75a3 *tests/testthat/test_plot_images/visualise_many_sequences_test_21.png
0c33027aea02be45dff1fe6b175b0829 *tests/testthat/test_plot_images/visualise_many_sequences_test_22.png
148eddbf99b9f32a62842d3a18cbb6b8 *tests/testthat/test_plot_images/visualise_many_sequences_test_23.png
1172ebe08b0e0d398a77a093df712457 *tests/testthat/test_plot_images/visualise_many_sequences_test_24.png
9f154c88a6ded5bdad8c3f7a65c20c28 *tests/testthat/test_plot_images/visualise_many_sequences_test_25.png
1b5585a1dd14be6c422a8beec6c14559 *tests/testthat/test_plot_images/visualise_many_sequences_test_26.png
20fe346a852e8924dad3667ede788a74 *tests/testthat/test_plot_images/visualise_many_sequences_test_27.png
d4cd7e465e5efa58d3c5802c350ed5ac *tests/testthat/test_plot_images/visualise_many_sequences_test_28.png
fbd3b0cd21ab789ef4f7bea8b0ee7561 *tests/testthat/test_plot_images/visualise_methylation_scalebar_test_03.png
77f84f866b1dba3039f5ca7ed2c29e5a *tests/testthat/test_plot_images/visualise_methylation_scalebar_test_04.png
ce2a0760aef24e5590bcb9b8c5503d3d *tests/testthat/test_plot_images/visualise_methylation_scalebar_test_05.png
f737e587f2fab3a786583414fd9e107e *tests/testthat/test_plot_images/visualise_methylation_test_01.png
a39443c27193d466e45e5bcad923bad6 *tests/testthat/test_plot_images/visualise_methylation_test_02.png
4ceb47a670530ced914f64af3781ace6 *tests/testthat/test_plot_images/visualise_methylation_test_03.png
254aaa88b09ed4d0321b95fec06941ce *tests/testthat/test_plot_images/visualise_methylation_test_04.png
0a596983a887560e605b783195f4fa99 *tests/testthat/test_plot_images/visualise_methylation_test_05.png
d5129a8d1afcd42287f12e82a96eab0a *tests/testthat/test_plot_images/visualise_methylation_test_06.png
804b759af71d8d91e595a699bb7b91b9 *tests/testthat/test_plot_images/visualise_methylation_test_07.png
a7a2cc792b027cd45e4577107b7e48e7 *tests/testthat/test_plot_images/visualise_methylation_test_08.png
a3128dde7c89f2c223fe70d763e7bc4d *tests/testthat/test_plot_images/visualise_methylation_test_09.png
9b10ea2b8aeac682c7bcd05a06b2a898 *tests/testthat/test_plot_images/visualise_methylation_test_10.png
3989f9c9b58f8f7bec2a1251875f0592 *tests/testthat/test_plot_images/visualise_methylation_test_11.png
94e8d31fb3652e878b5201331e320e0f *tests/testthat/test_plot_images/visualise_methylation_test_12.png
90ced7ac0e0a2729d82cf81feb0fe408 *tests/testthat/test_plot_images/visualise_methylation_test_13.png
168b0574339a2a6e0dbb8bbf04a238ab *tests/testthat/test_plot_images/visualise_methylation_test_14.png
5d286ae03871bc8084fa87f4340d86b7 *tests/testthat/test_plot_images/visualise_methylation_test_15.png
f02af4e77590053a2a07c8f2c8a3ac93 *tests/testthat/test_plot_images/visualise_methylation_test_16.png
95a26addd917db0e966283b012e6898c *tests/testthat/test_plot_images/visualise_methylation_test_17.png
f43170fddeea6ce5544838e6f9d1e67e *tests/testthat/test_plot_images/visualise_methylation_test_18.png
9e72b763ff538ed1754429d365b7c1e6 *tests/testthat/test_plot_images/visualise_methylation_test_19.png
809f029446e69eef6991b2a9b59742be *tests/testthat/test_plot_images/visualise_methylation_test_20.png
2ece9a8658453a9ad7f9dc89fb129ca9 *tests/testthat/test_plot_images/visualise_methylation_test_21.png
8882525bba0faeabc1df5a0b1f6cdb3d *tests/testthat/test_plot_images/visualise_methylation_test_22.png
bc77e8d26283882a6d19f969db046cff *tests/testthat/test_plot_images/visualise_methylation_test_23.png
010cf569bd3309df981fd7a9bd55640f *tests/testthat/test_plot_images/visualise_methylation_test_24.png
dde125d98c1c75a0f03383b6f2e1e465 *vignettes/interactive_app.Rmd
