71c3cc7ae17ac266eede0d385b5e6deb *DESCRIPTION
0283c5d0a7b9b7d568505f5c593072b3 *NAMESPACE
5d41f0bd372307117b0f6e3b9f8c6307 *NEWS.md
213b48e664640ba1811ae294a0aba89b *R/RcppExports.R
10eedab737cabe33af6d4a2318f0d55f *R/cophe_hyp_predict.R
d130e77087beec0c17a25d71f25c356d *R/copheplots.R
15fda38720c73326cf7f8833b8c73d97 *R/cophescan-package.R
7a1a40018e58370c5087149bfdf4fecf *R/metrop_hier_priors.R
7f9b43c16d85f8c2339ff16279183989 *R/multitrait.R
3a55eddc4ca665c3482f4ef06720f9f9 *R/multivarsusie.R
2e739c6b8127080a666233c5354d682a *R/singlevar.R
1b515a0468fc303044924c92ccb448d5 *R/testdata.R
d41d8cd98f00b204e9800998ecf8427e *R/zzz.R
3023d6064e6f4538f8e030f3a1138812 *README.md
8bccf13a9b32ad44ed8f7956c7cf6648 *build/vignette.rds
b629b782f59d7875b5db3a26764cac0d *data/cophe_multi_trait_data.rda
28ffaa826336dc397eed2dd4279b91d1 *inst/CITATION
4d98615208542eb2ec96bcbc32555bf4 *inst/doc/FixedPriors_03.R
966561ef539ac61ccb7748831461950f *inst/doc/FixedPriors_03.Rmd
6d26d8f4297225b7f04fc9886170cd2d *inst/doc/FixedPriors_03.html
c8875ef239ad949549c2f6852ed036a7 *inst/doc/HierarchicalPriors_04.R
b0e0d2d399238a03e67626982814bcfc *inst/doc/HierarchicalPriors_04.Rmd
1aaded0c3d5bcd56daa05e4ace2030c7 *inst/doc/HierarchicalPriors_04.html
8386e49edb34bec6b073385a6143c56f *inst/doc/InputData_02.R
4dd9402ac6825e1cc3cdba1c0ad7b1ce *inst/doc/InputData_02.Rmd
459c6e3d4653a315fe64a3d0cfd68121 *inst/doc/InputData_02.html
5de05805b32bd3242fd04c70d117d726 *inst/doc/IntroductionCoPheScan_01.R
e525af4aed675ba13f0a90640ec61f9f *inst/doc/IntroductionCoPheScan_01.Rmd
d238680d60238e902196bb0ccbfb251a *inst/doc/IntroductionCoPheScan_01.html
792c52ed8a69f80f4b14c2fd52f21d48 *inst/pkgdown.yml
4242f93e3e512ccc298369d2ede8490e *man/Hc.cutoff.fdr.Rd
7c41837d3d5db05ad70d4d0922032e7f *man/adjust_priors.Rd
ed1288022175f35c41e9e1595ad9e3f9 *man/average_piks.Rd
3915f97ec63cd9e0a3e3492cedb6aa3c *man/average_piks_list.Rd
125d7d3c2232ff21acaaa4aafa438303 *man/average_posterior_prob.Rd
d038236be9d55f56501a4754ea59cd34 *man/average_posterior_prob_list.Rd
c21bb9b5f7a5e874526efd1457676db9 *man/combine.bf.Rd
66004ecb09aea6963510092abac964fa *man/cophe.bf_bf.Rd
a32205141c5530d355a2ec1960605f96 *man/cophe.hyp.predict.Rd
8e0ea245b4d3afbf3c85e909ad8b0e4f *man/cophe.multitrait.Rd
d8a9ab83ab8412bd40a43184abe88f9a *man/cophe.prepare.dat.single.Rd
ff5414ffff462e8e36fb0713b430e66d *man/cophe.prepare.dat.susie.Rd
6c8a6895a37bf6fd6d7bc2ab8850892c *man/cophe.single.Rd
fc81a621e1f7fa492c6c696c3ea198df *man/cophe.single.lbf.Rd
5d664ef3dac0c1dd041275029a7fafe2 *man/cophe.susie.Rd
9bd933cbf87899f0adafd07791461164 *man/cophe.susie.lbf.Rd
b7a34aae1c6cf21251eb406261a8100b *man/cophe_heatmap.Rd
e98af3a4e4fbc3c6cf2854e5e12a6757 *man/cophe_multi_trait_data.Rd
e90d2d8b5b2a6241a7514fa515c7b520 *man/cophe_plot.Rd
07bbc0289361cddbeb6ae07d5f0f5277 *man/cophescan-package.Rd
6d2ff662b1e4fa1a9e31e96dc8ea568f *man/figures/logo.png
2ae4c7a0e2a0f40a3e61c99bbb555f08 *man/get_beta.Rd
f1415a41f919f5fc4ca53243f1464700 *man/get_posterior_prob.Rd
8f50680298e774d07ece75e1239d2c57 *man/hypothesis.priors.Rd
8f6577efd1bf1e15ff573efe7acb8a0d *man/logd_alpha.Rd
f23c48dd400ff7ff54ba8739e796646c *man/logd_beta.Rd
43c4e4cb4c13ca985542cbf043762af5 *man/logd_gamma.Rd
768bf0d8d3b6d2ab278712918dad05e5 *man/loglik.Rd
c976f702f3c0ec22e811c589337565d3 *man/logpost.Rd
c5229dd88d62eba9f2d4e5e74e69b2bd *man/logpriors.Rd
165549bdc5663fe5613c9e399a6fe3aa *man/logsum.Rd
e7459be4dc24bf5ae3fcba528cb344fc *man/logsumexp.Rd
fb7fd80047116bc5b99ffcdf1b5a601c *man/metrop_run.Rd
3467cc5fdd42730b2be9abf8cbb955b3 *man/multitrait.simplify.Rd
6629e11ba3311e92fa7c6380b09305e9 *man/pars2pik.Rd
039153d0fa8c7a04694f306ea1572821 *man/pars_init.Rd
2734750c58a65e5faca0e28b2442db69 *man/per.snp.priors.Rd
83888328a8086007e6deb2a90f3d4830 *man/piks.Rd
80377953e140a9f83dc3bf7efebbb31e *man/plot_trait_manhat.Rd
779cfcd7762bff6e76e9e6518bf32b47 *man/posterior_prob.Rd
0335074c3b38fddc87b38df12b4177ab *man/prepare_plot_data.Rd
a516875cb0c15935a3b95dfc3450d3c4 *man/propose.Rd
3c4d802f4811817342435ac1c69fd3df *man/run_metrop_priors.Rd
1c934ab3df0af6bb5638d81d18be5b6d *man/sample_alpha.Rd
1f6e0d64eb70ec502a9ae5bd64b30827 *man/sample_beta.Rd
e84b596af1ce118704aa4d8db84980e7 *man/sample_gamma.Rd
4c794e61f32a1817592d370dc48da0ac *man/summary.cophe.Rd
373f2ff38f526b28c6390e6b1708a36b *man/target.Rd
d2773de8a526eba651ace8a09e431abb *src/Makevars
d2773de8a526eba651ace8a09e431abb *src/Makevars.win
65358ee1bacbe768722c1ab72f41ebf7 *src/RcppExports.cpp
0b5cc71857c926e173e70d04b91ef0e3 *src/hier_priors.cpp
635a2bdc60819ee8dd50e6bfdee5a774 *tests/testthat.R
7f85cbe3069eafefb22a19f19e6784e2 *tests/testthat/test-hier.R
92223df5eba4480abe582f4508dc247e *tests/testthat/test-likelihood_calculations.R
966561ef539ac61ccb7748831461950f *vignettes/FixedPriors_03.Rmd
1e28b7207cc594c5341fc6c29a4e9937 *vignettes/HP-cophePlots-1.png
a2f3bb285b6f27b4acf59afe73d04f19 *vignettes/HP-cophePlots-2.png
84183c9eba08d6f1f1a4f13a059cc9d4 *vignettes/HP-cophePlots-3.png
ccaef0c28ae02b4336a70605927d2467 *vignettes/HP-unnamed-chunk-8-1.png
fb7b7b104acd89ff2f25ed58d3f40a2d *vignettes/HP-unnamed-chunk-8-2.png
792f2528ec679c05a836da8ebc6784a8 *vignettes/HP-unnamed-chunk-8-3.png
b0e0d2d399238a03e67626982814bcfc *vignettes/HierarchicalPriors_04.Rmd
4dd9402ac6825e1cc3cdba1c0ad7b1ce *vignettes/InputData_02.Rmd
e525af4aed675ba13f0a90640ec61f9f *vignettes/IntroductionCoPheScan_01.Rmd
