c30526b94f122633d698dc8edbad5b55 *DESCRIPTION
b5a3531aa1253f29453757539944b8ab *NAMESPACE
17e2e32ebdb7e1b42e9ea8006aa7274e *NEWS.md
ba11b59c21457745b9c9109844571dc2 *R/analysis.R
d59c661313ebb4863faa276399c641a2 *R/classes.R
c82dba833a95a69f42c37c04cb8c8dba *R/conversions.R
050c45af703f84d18bb3b90f34640657 *R/data.R
299986616daf63e2722ab7dd570d6c18 *R/discovery.R
9d87873b67a422bf193cf977bab5eb70 *R/io.R
9c20c3cf6f01c76bac4073a194a2fc51 *R/plots.R
e6ee4970ccbe8b34913da030453e9430 *R/processing.R
8671bc2ff67d5fd58c8cee59d79d432f *R/utils.R
09f8870e4e6d7f6fe6dba7affb4718ed *R/wetlab.R
84c6ef6f518303c13af935fafe03d1af *README.md
f80ee38d15a4d66c9e7b5b67f077a083 *build/vignette.rds
3cab28086e426fa38ba7d4fbf9032a28 *data/sars_fragment.rda
a43a0fe09a7bd2c22cbc5ccd80ca7a31 *inst/doc/baseq-vignette.R
81e141f9482e255cc3d07dc619e182ba *inst/doc/baseq-vignette.Rmd
e44cfd5f32d14805b590b142c9929a9a *inst/doc/baseq-vignette.html
d1559d8dc2cfdda7102d90ff2139d6c1 *inst/extdata/sample2_fa.fasta
4fe1d07e48c427b144b27ab2022ce831 *inst/extdata/sample3_fa.fasta
01645764d72eb81b627caff3870d048e *inst/extdata/sample_fa.fasta
4cfb0c526ce7b7a8c12b79b76e3c16c0 *inst/extdata/sample_fa_clean.fasta
65c253d7f6e5ada0544c4b6e72879895 *inst/extdata/sample_fq.fasta
0fa86d47c44f22ee2660a77b1692a5b5 *inst/extdata/sample_fq.fastq
a44cd2810d20bd2fa32a59edf01f3d5d *man/as_Biostrings.Rd
23bc3c8ac0a305f065eb5eb704407c01 *man/as_baseq_dna.Rd
cb27fada5ed184a3dad42f08744113f7 *man/as_baseq_rna.Rd
0ffb1b523403032b241f3b853afcfd1a *man/calculate_assembly_stats.Rd
32bc9e494cab8d8575c2e3f8b3f29610 *man/calculate_charge.Rd
05f4e92b6c524f5336c4be397321a232 *man/calculate_codon_usage.Rd
ee85c24b10cca3c1bb8714def19c0e06 *man/calculate_identity.Rd
dca76311356146b0578284923740bb82 *man/calculate_mw.Rd
53b30d4e901041895fde23ebaa5c3924 *man/calculate_pi.Rd
93e038bb79fa01f5dcbf4cc41363c324 *man/calculate_tm.Rd
1dbe7fae74630b76064e7a81c9a3153c *man/clean_file.Rd
542366a43a3829ad97a8eaf7c1362d58 *man/clean_seq.Rd
2571ffe88d43fe6d74e55d5365e7b48c *man/count_bases.Rd
8bdc10d491ad45752eb7e34fe00cc7b4 *man/count_kmers.Rd
349f6f58a6e4477352929ac2e3e263fc *man/count_pattern.Rd
b5e8fcfd76996e3b515d5f41477682d2 *man/dna_to_protein.Rd
f931f8c1fe46c520fad11f34745ef240 *man/dna_to_rna.Rd
b3da118c3354bb745f4ca1385f73651f *man/fastq_to_fasta.Rd
2eacfbdd2f85938211dcb4060520ad75 *man/figures/logo.png
26652782dce4f4ab9af8710e31af0b93 *man/filter_fastq_quality.Rd
2f4fa49db1e41b3ad5959827f847e655 *man/find_cpg_islands.Rd
ca6687643c6a12c006cb8818cf607155 *man/find_longest_orf.Rd
d542a11c02283fdaf42c36a8d7ba1d84 *man/gc_content.Rd
ee7c8a431c15e7a0524783f72f23a204 *man/get_genetic_code.Rd
d4d383b7e3e06e5da74897b30f7d7744 *man/plot_aa_composition.Rd
581a0b7d67df4828e5bf86b339187735 *man/plot_dotplot.Rd
c2787d7526a26e40d5b038b506452a0b *man/plot_gc_skew.Rd
23e8677946f1d607404840f408e3d2a3 *man/plot_hydrophobicity.Rd
6f7ba7d01c9dfafca14633e777773547 *man/read_seq.Rd
0589638dd5384c7e61e0239baa2c00aa *man/rev_comp.Rd
c04477a96ef6272973a216151f0e9d6b *man/reverse_translate.Rd
c9f513bccb72e4ee26eb3daacbc217f2 *man/rna_to_dna.Rd
fc91d8da32c712d12ae9912ef65b679a *man/rna_to_protein.Rd
e4e4664a03457d06947ada17d0e549af *man/sars_fragment.Rd
4a8ad86c0587cf0ddc5546b0703663f7 *man/search_motif.Rd
528763a964b993e85189298bd781112b *man/shuffle_sequence.Rd
501fd8e13f89f1996ca954ac2ef016ec *man/simulate_digestion.Rd
20a5880ae944dbaca34cd50b25924f13 *man/simulate_fasta.Rd
0c4fdcb74fe77a1ef6494b8a0905666d *man/simulate_fastq.Rd
ae21564e90040e2d16fe2a6401132dc8 *man/simulate_pcr.Rd
77abaaa710a49f5376327b5b6cc195a2 *man/simulate_sequence.Rd
8f0192e042677842d5ea00ab35d8657a *man/summarize_fasta.Rd
667e2a32a86cb10c854c38297ea17186 *man/translate.Rd
12b26f6c0a5fccb6bc5a662a15726897 *man/write_seq.Rd
09ea34c418f333cf3526d4593d823a3f *tests/testthat.R
56f99d2fefde9bd236fdb9c777e4f05b *tests/testthat/test-io.R
e0fca10eef784e170224878200c18a4a *tests/testthat/test-plots.R
8a4c7e5b1ca9762a4b88db680ff9623f *tests/testthat/test-processing.R
1f1e4513c0c2cf9f875254ee90209241 *tests/testthat/test-scientific.R
81e141f9482e255cc3d07dc619e182ba *vignettes/baseq-vignette.Rmd
