3909748e4ed7d45587bb7771b5cf74fe *DESCRIPTION
cc1b70bb1d8621b7f50d5c7f9023b43b *LICENSE
cd6108cda1d8c807a6b51395d81ec86c *LICENSE.note
9b92b9cf1997872917de0707b00cfc89 *NAMESPACE
c1f37fc2d7be5519f4999819bd185107 *NEWS.md
6566de7ba14e716429174a05ea2af9e2 *R/SHARK4R-package.R
047d60912f438b46b7625d5fbccc799a *R/algaebase_api_functions.R
1e624276c7d21f1f02f1c4d429007fd9 *R/check_codes.R
1b10b11ecbd83216fdb188f073309c82 *R/check_depth.R
53852741cd1b6c39cd097271cb0c72a5 *R/check_fields.R
b30f530ad157d1c0423ba16039427409 *R/check_logical.R
b91322e10c84c8b3efcb866dfe2b3c94 *R/check_onland.R
1ae1596e3431de6d68dbb672a9240dfe *R/check_outliers.R
f00dfd327a3a440f62fc8b24beb4fb28 *R/check_stations.R
d0e2ec6ec935790687274aa3a437a9e4 *R/defunct.R
c2fa979cd5178f12ab4c7e809c62a191 *R/dyntaxa_api_functions.R
8965e67806ac01ce4a9d4b91e4ae56c5 *R/hab_api_functions.R
4ddc3687340565edcd0977cb689f333f *R/iRfcb_functions.R
2b4e01f47a9372fe910b1587a55c5320 *R/ifcb_is_near_land.R
1655a60358af1cd531c20ad881bcd595 *R/ifcb_which_basin.R
8e93fcc9ca7697daeedf8fab5b293dac *R/nua_api_functions.R
f026704413194ec178754ca3cdc63083 *R/plankton_toolbox.R
1a3359b98057047565f40386f49dae92 *R/plot_map_leaflet.R
8f0eeee673e4c21541131c8d13708ba9 *R/read_delivery_template.R
0db472d745e3b3cbdb215b0b9cdab7e4 *R/run_qc_app.R
fcb2c7bea54da737204fdad812165918 *R/scatterplot.R
3031a4a816adb79676aa499120f55c51 *R/shark_api_functions.R
67263ba79edad54f5874f26221b26811 *R/shark_read.R
28d8b3301b916d50e2ce880493996963 *R/util.R
56ac46103d8cd093e8f74234a4cba5a1 *R/worms_api_functions.R
742ab7224ad4d39580e07db8b4d48082 *R/xylookup.R
3e9a9ab853114178584196d53ec9ca8f *R/zzz.R
6d45c57067f753028600dde4865c06b5 *README.md
5df4012591c531ac953796f889c147e9 *build/vignette.rds
3e35415bb5c3413fafd84b869759e4d7 *inst/CITATION
4fd1b1288778d583ffccd4ca0348d140 *inst/WORDLIST
2e0ce9a63f174cb6b3ee8325f639410d *inst/doc/quality_control.R
cb4fc6eb66f00f5d13e9817dab710178 *inst/doc/quality_control.Rmd
b6c6b0c1abf8a77759167395df099294 *inst/doc/quality_control.html
ef03640f816fb3dbf3bfef2b00c4199d *inst/doc/retrieve_hab_data.R
22ee26c4855e77f4ab3758cdf50636ad *inst/doc/retrieve_hab_data.Rmd
fac1d32941c9e90ddbb6e54f84b3ecb3 *inst/doc/retrieve_hab_data.html
d5463cab89ebc2333a75bf385856d4cb *inst/doc/retrieve_nordic_microalgae_data.R
112bcc3edb05be4ed4525b7aadfb2378 *inst/doc/retrieve_nordic_microalgae_data.Rmd
0e5bcf78175dc1f46b58a4b6d6885feb *inst/doc/retrieve_nordic_microalgae_data.html
0e21b46ce3970ec61d06f9e4b28e2152 *inst/doc/retrieve_shark_data.R
6d0e0d08da185feeb6e1c1c401b9d85b *inst/doc/retrieve_shark_data.Rmd
8c5056ed52b53bccecd884d15b7a8b0e *inst/doc/retrieve_shark_data.html
7c7469bd230fd508712fc5c6473535c6 *inst/doc/retrieve_worms_data.R
05e043b249756dfd2d404e1b5dc44aed *inst/doc/retrieve_worms_data.Rmd
105cc18ac659c02734c315100115e7e5 *inst/doc/retrieve_worms_data.html
5497b0156c58025dac74444713d62c59 *inst/extdata/Anholt_E_2024-09-15_0-10m.xlsx
ad58dc60d88618856c88f60764c879ce *inst/extdata/station.zip
b124dc8eb80c3893da8a2fdb5ae0a1ba *inst/shiny/shark-qc/global.R
b22b8f316479c1bb1093855a8fa44ab1 *inst/shiny/shark-qc/helpers.R
87fdd900aa4702f2ae1167ef10977784 *inst/shiny/shark-qc/report.Rmd
887014d928b542624526933d3a517a98 *inst/shiny/shark-qc/server.R
bacbf47db27591796bb9dcca10260493 *inst/shiny/shark-qc/ui.R
5db388c7ea53aefc3d90ed62caece81b *inst/shiny/shark-qc/www/logo.png
54b36dc17eac1b9aea4a2b38c18da4e0 *man/SHARK4R-package.Rd
3736168fcf42b41eeddf5b29f570c23a *man/add_worms_taxonomy.Rd
03f1a76e6387f6374305eca502293e25 *man/assign_phytoplankton_group.Rd
26d32dde1af761f6bcf5b28bfb456022 *man/check_Bacterioplankton.Rd
abb3efd64b1ecc6839fba6fcc0db3f31 *man/check_Chlorophyll.Rd
f2cc473adea3960ae70d0f6de20456a6 *man/check_Epibenthos.Rd
04f1adbf076f8e2fcfaaa8801b1d5d57 *man/check_EpibenthosDropvideo.Rd
022dce58550b87c4cd3e719df932582f *man/check_GreySeal.Rd
3df1879c7c58da67d372d3fb0c7d3298 *man/check_HarbourPorpoise.Rd
5bf8b5720159e3b6d985dfd10503103c *man/check_HarbourSeal.Rd
5bcfab032fa9cd72ca16329c7fd5e13a *man/check_PhysicalChemical.Rd
0d2ba3e4f7c5498a8f7a5c85574d7f30 *man/check_Phytoplankton.Rd
aa9a961aa59ec00023dd32bdd24296e8 *man/check_Picoplankton.Rd
645e3fb5d7077a3b45f517929e6fb517 *man/check_PrimaryProduction.Rd
763f51c0508703f3b84f17e14c656ccd *man/check_RingedSeal.Rd
5ffde5c67f512262f07695e08a0b039e *man/check_SealPathology.Rd
3eb5b4e23b62a7085be709b4c9581590 *man/check_Sedimentation.Rd
3c3cf1024f452f64dadde4d3baf1c145 *man/check_Zoobenthos.Rd
1eb631d3da9f58acaf3e5e6abef45cce *man/check_Zooplankton.Rd
3ea2b51bae4afee66c9c02cdb3832613 *man/check_bacterial_carbon.Rd
8995105df6c30077f14880bd658905d1 *man/check_bacterial_concentration.Rd
25e4f1b0393a121bff1408a40ddffdb5 *man/check_bacterial_production.Rd
34e482856ff86f44a08598febc9cc7a3 *man/check_chlorophyll_conc.Rd
0c0432707731d580f44cbca650fef27e *man/check_code_proj.Rd
a384aa9b2562c6fb47b26d933e6cbcd3 *man/check_codes.Rd
eb5cae888ddfd7037393c44d611b49b3 *man/check_datatype.Rd
cd175ab5f1e8a0e585169c3d7c9c1bca *man/check_deliv_Bacterioplankton.Rd
c81ccf68b13aadc95d944ebc8edf88f8 *man/check_deliv_Chlorophyll.Rd
0139ad7dc1478f715c77aaa8b2de2f79 *man/check_deliv_Epibenthos.Rd
844ee3c08a8bf208c7be1c36f38bea34 *man/check_deliv_EpibenthosDropvideo.Rd
5ea390e817a3b13a477bf735f56cfc08 *man/check_deliv_GreySeal.Rd
a155ef7802c75b1ad50801ece677b176 *man/check_deliv_HarbourPorpoise.Rd
c841564b8f10c281d21dbfc13572d355 *man/check_deliv_HarbourSeal.Rd
106a68255dc8afdf899ebbce3106e033 *man/check_deliv_PhysicalChemical.Rd
cbd8bd6cbc26a8f48da4e177208bb0be *man/check_deliv_Phytoplankton.Rd
711edb91fd82685cfe62446164983de2 *man/check_deliv_Picoplankton.Rd
3f317d2157b1440a51143ccfba241b64 *man/check_deliv_PrimaryProduction.Rd
dbda5cec3129147d11a8db0a594bcefa *man/check_deliv_RingedSeal.Rd
53be624080eef2052af6e4f7bb59ef16 *man/check_deliv_SealPathology.Rd
49d0254433ed91f01338431990d1844e *man/check_deliv_Sedimentation.Rd
30d2478ed5f5c8057cbbd420e3230818 *man/check_deliv_Zoobenthos.Rd
66bb1b2329826a82d04895017d02ff49 *man/check_deliv_Zooplankton.Rd
26330218c521aff68e5bc3fb2e4b1639 *man/check_depth.Rd
acc68aaad3a74535f0565370f799cfa2 *man/check_epibenthos_abundclass_logical.Rd
c734daf9801f3c7bdd6c54ac9922c5d9 *man/check_epibenthos_counted.Rd
1e5012ad6357194c02eb3740ec92404c *man/check_epibenthos_cover_logical.Rd
e58d7ee2c9a3ffb7ae38d18cfb4c60b4 *man/check_epibenthos_coverclass_logical.Rd
7916ec2ac8ca9ea5a1e9f6b1400a54b3 *man/check_epibenthos_coverpercent_logical.Rd
6b653bd9a63d123ff94919e8a3ea714a *man/check_epibenthos_dryweight.Rd
149d0f829b0b4a3ba40ae2a140d84531 *man/check_epibenthos_sedimentdepos_logical.Rd
3718adcf62c1426a2c9c6568778da9b1 *man/check_epibenthos_specdistr_maxdepth.Rd
2423b5b71c463461f5db662050ae4020 *man/check_epibenthos_specdistr_mindepth.Rd
f590f57f99404e5d872c84c0dcaaf33f *man/check_epibenthos_totcover_logical.Rd
6dec19ff52afd84aac96ff793d16ea59 *man/check_fields.Rd
f31746bc09041b7385e9e1a2b9fcd8c3 *man/check_greyseal_counted.Rd
ea139f4391a8d5bf7febac5b7b479b94 *man/check_harbourseal_counted.Rd
31427cada1a810bf8e36a8bcf68664dd *man/check_harbporp_positivemin.Rd
53877f2b0be6f50e55857fd9be0156a7 *man/check_logical_parameter.Rd
c49df8c7bbc2d1672601fc01bbe8badb *man/check_nominal_station.Rd
c35b6198630207c4297a817dcb01c31d *man/check_onland.Rd
5524285ea4b0f95d872eb46c7fcf1160 *man/check_outliers.Rd
eddcf096d8eaa829f58d0eb220735558 *man/check_parameter_rules.Rd
232581d2777570472412a80a9a4e4bb7 *man/check_phytoplankton_abund.Rd
4e216ce3e57695489a0157121f20fe05 *man/check_phytoplankton_biovol.Rd
f8eee46c69284a1470ec39205b269127 *man/check_phytoplankton_carbon.Rd
29cdf65d7a0b3f67c15c18caa5d82bb9 *man/check_phytoplankton_counted.Rd
bfb04e435e9feb0302f7013ab5684bc4 *man/check_picoplankton_abundance.Rd
2ea2e35317f16defc955ed4c9bbae7c7 *man/check_picoplankton_biovol.Rd
522ef6cadb9f22be09f139cf7d32af54 *man/check_picoplankton_carbon.Rd
6bbadc8a993029fe0feea74b6a80aa77 *man/check_picoplankton_counted.Rd
555269cd580e69750e1a80b7bbdc613c *man/check_primaryproduction_carbonprod.Rd
f36ef07e19f84acad9fc885f26bc76e6 *man/check_primaryproduction_carbonprod_hour.Rd
203ecaff647ce35ae7fea1cf15fa8eac *man/check_primaryproduction_carbonprodlight.Rd
0135a64e9df993404daadab94030566a *man/check_ringedseal_calccounted.Rd
622f5070d6ecefc3057edd3926160236 *man/check_setup.Rd
67ddd77634e067d1ef884953f4c1dd58 *man/check_station_distance.Rd
d0111c71438c2de1d3eba11740dc2f4c *man/check_value_logical.Rd
7c10de63316daaaca789dcd0a50c4257 *man/check_zero_positions.Rd
d1d94d230822c2ff50dbe7cc5d8f0bc5 *man/check_zero_value.Rd
204822604e865eeaab23b9767dbd964b *man/check_zoobenthos_BQIm.Rd
1474483b8c506e5d0a15f729c43d5523 *man/check_zoobenthos_BQIm_logical.Rd
d990532f65c535307db1e7a446a5b1d3 *man/check_zoobenthos_abund.Rd
d597d8735aec0cd0daa9f8737ff86a6f *man/check_zoobenthos_counted.Rd
7591395135a8875045627be25482d3ac *man/check_zoobenthos_wetweight.Rd
2b8a2c4b2d57162988f100ca962c7f16 *man/check_zoobenthos_wetweight_logical.Rd
584ada34f087b60e05d0bd7d9128bde7 *man/check_zooplankton_abund.Rd
50e72b242376d7b3fa57377f9c9c7e35 *man/check_zooplankton_carbon.Rd
1581653389b5410102299dedd46c2351 *man/check_zooplankton_counted.Rd
d0247f2a4a0cbe525bce599ecb34c94b *man/check_zooplankton_length_mean.Rd
346a8982db82da93ec49b519bbb32292 *man/check_zooplankton_length_median.Rd
a8476a0fa138661f5561ac1a61712a59 *man/check_zooplankton_wetweight.Rd
c9805c2a4abc8153a47b4b3ecebb5d60 *man/check_zooplankton_wetweight_area.Rd
a3119fb70bc9208664f6b9357f98a38f *man/check_zooplankton_wetweight_volume.Rd
f8a28293fbfcb37b7baa1ac6339de3fe *man/clean_shark4r_cache.Rd
e343108a3d1b141a632519f70168af8f *man/construct_dyntaxa_table.Rd
c2bf014c4d1917eda08f2a1e68007abd *man/convert_ddmm_to_dd.Rd
3b5fc601f2904c239b005f6975207981 *man/defunct.Rd
a1cbaf3f328e8d74e747faacf640c7fc *man/figures/lifecycle-archived.svg
6f521fb1819410630e279d1abf88685a *man/figures/lifecycle-defunct.svg
391f696f961e28914508628a7af31b74 *man/figures/lifecycle-deprecated.svg
691b1eb2aec9e1bec96b79d11ba5e631 *man/figures/lifecycle-experimental.svg
405e252e54a79b33522e9699e4e9051c *man/figures/lifecycle-maturing.svg
f41ed996be135fb35afe00641621da61 *man/figures/lifecycle-questioning.svg
306bef67d1c636f209024cf2403846fd *man/figures/lifecycle-soft-deprecated.svg
ed42e3fbd7cc30bc6ca8fa9b658e24a8 *man/figures/lifecycle-stable.svg
bf2f1ad432ecccee3400afe533404113 *man/figures/lifecycle-superseded.svg
5db388c7ea53aefc3d90ed62caece81b *man/figures/logo.png
5048bd553b32bfa5a983917dfe85b2b4 *man/find_required_fields.Rd
b6246f7668024c12e27348f3ab02031d *man/get_algaebase_genus.Rd
b4cb879c3de2d9feb0489a8bc9a7f397 *man/get_algaebase_species.Rd
2b9f69165430ffb0ac2579d7d7bdb566 *man/get_delivery_template.Rd
a22f04fd689475ddedbb10cd18e718ad *man/get_dyntaxa_dwca.Rd
33b18f72770a8c21c000180b839edf4e *man/get_dyntaxa_parent_ids.Rd
d592b8a18e062573c5f17c97f1a2e540 *man/get_dyntaxa_records.Rd
342943796d6df03966970c8b23ba175a *man/get_hab_list.Rd
22198cfb5b4f03c1f0a930cea34f8c6a *man/get_nomp_list.Rd
3154ba37a84ec2ae59a7d24f82057da0 *man/get_nua_external_links.Rd
adff4c3862cc93c1c671c74971947501 *man/get_nua_harmfulness.Rd
a232fd2c0cfef07a0eb2e17f869fc200 *man/get_nua_image_labeling_links.Rd
2020380081429948ef5a70e9c2bd8fc5 *man/get_nua_image_labeling_metadata.Rd
c7e57bcd1a4f603e9c591e8a7b6999bc *man/get_nua_media_links.Rd
31d0539581b5c1487fbde4e011d5f64d *man/get_nua_media_metadata.Rd
87736f72ec20803cf07849288f201f4c *man/get_nua_taxa.Rd
1bcaec0ef8e06c5e9bb072567a4db65d *man/get_peg_list.Rd
9cc5554c62034104a04ddcad3a965bb1 *man/get_shark_codes.Rd
7cb48f9a8e78b021d2890d9d990ea51a *man/get_shark_data.Rd
1e38cc59b42f9243cce420d03f34be5d *man/get_shark_datasets.Rd
cb31f62833ddcccbc0dccf4bc32ad49f *man/get_shark_options.Rd
cdaaf3f8eec9b44e28e9256ac3aecf6b *man/get_shark_statistics.Rd
75ac06bf477c396e57b5c8c90b3b80c3 *man/get_shark_table_counts.Rd
b934fadd521a94167453f487f6fb3d18 *man/get_toxin_list.Rd
b05e0d5634abc1834e127a1b82d276b4 *man/get_worms_classification.Rd
d5ac6cf352e40041bd1fbcc3f781bb3e *man/get_worms_records.Rd
ef14cbe16aa0c8b484f0c6468542a64d *man/get_worms_records_name.Rd
1a0ed28872b80e2fc5c6f44f700bc879 *man/get_worms_taxonomy_tree.Rd
bd94aedf6600ba230897febcb289ee2c *man/ifcb_is_near_land.Rd
97c0e1c3e4dc9064f1fd273d94278fc8 *man/ifcb_which_basin.Rd
938f0ed1b1d5d189788300a61788f277 *man/is_in_dyntaxa.Rd
e218e876273986448c7ab6315c517096 *man/load_shark4r_fields.Rd
55752dc11ebdf5caabd71963cac59f31 *man/load_shark4r_stats.Rd
2dc3209af263bb6089cf0b598f9d9533 *man/load_station_bundle.Rd
9a2f256b4bb5808995052e4e6a364358 *man/lookup_xy.Rd
4972891b1422fa6087f15275abc35186 *man/match_algaebase.Rd
483741fb3ee3a08e01660e7bc5d836f7 *man/match_algaebase_genus.Rd
7420864b797293c6bf1f5baf770750ca *man/match_algaebase_species.Rd
b10cd5bb9e32f3b3f2beedb54522ea10 *man/match_algaebase_taxa.Rd
34b24aa793a17a85a078c59586016766 *man/match_dyntaxa.Rd
7f3ca701a0e81b2e2b235173ddbd87b3 *man/match_dyntaxa_taxa.Rd
3376fd775d1bc4e321b0c5f2cc00cf3b *man/match_station.Rd
b9747e687a4a8cf568f2821f83a33aee *man/match_taxon_name.Rd
def81100cd57ff7ffd8b0980147282e7 *man/match_worms_taxa.Rd
0041c684745c51278563a0797a3385be *man/match_wormstaxa.Rd
9298d0563909e2714a4b305cd75710e0 *man/nominal_station.Rd
c01e705e5e17f6fb87cdcc2ecf5c44e1 *man/parse_scientific_names.Rd
7d621208467fa651e380fc1ee43536e1 *man/plot_map_leaflet.Rd
95aecf9c947bad4e628621b7c4b9a964 *man/plot_map_leaflet_deliv.Rd
b2e93b7dc9a9f7ccd0e1db193b11db3d *man/positions_are_near_land.Rd
d637ce46d047d92e605bb6c385b57f4c *man/read_ptbx.Rd
accd29e8636cf98a98c356d023b55f48 *man/read_shark.Rd
da7962f83df2568eb0da0f8a41487ac1 *man/read_shark_deliv.Rd
ba53ea7cde197f8fe05d1eb64c057d6e *man/run_qc_app.Rd
6f17f8720b6566001e382b0f920dc498 *man/scatterplot.Rd
5a3471279044088260860d57c0e03723 *man/shark_read.Rd
5c10af8ca2ab297e7530800271e39a53 *man/shark_read_deliv.Rd
0159b323374e09d4819128d660c21a13 *man/shark_read_deliv_xls.Rd
ef6fd43dd59c621b48fd128635ce4e07 *man/shark_read_zip.Rd
7f4b50a0a36a99835f589a4667a05dca *man/translate_shark_datatype.Rd
dddf10d8dacf5b0ad6e27335e4325364 *man/update_dyntaxa_taxonomy.Rd
7bae95930fd848f1a1e77e5ef60f9d55 *man/update_worms_taxonomy.Rd
5480136e71b8a597e52fa6b1af86510c *man/which_basin.Rd
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
411dae7fb9f2d943261e6aed5fa04b42 *tests/testthat.R
d034924fa79d6916ea425d32b422fa7a *tests/testthat/helper.R
8eb55b64db1776d1aa6acbbb141efb7c *tests/testthat/setup-cache.R
42066630036654e4163da535a5126fc2 *tests/testthat/test-algaebase_api_functions.R
c8dae3256c8788085157ec4be9050e62 *tests/testthat/test-check_codes.R
5c165f9aec7e2ab724df88fddbacaf38 *tests/testthat/test-check_depth.R
c136c568ae08e7b2fa3762e23b64cfcb *tests/testthat/test-check_fields.R
a0a82c688d7541671c8bda96a4a3b0b7 *tests/testthat/test-check_logical.R
bc8885a092bbc89a28b3a971f6a4fafb *tests/testthat/test-check_onland.R
b28468d03a32c08fd5d05d38f3b8b3fb *tests/testthat/test-check_outliers.R
033af1197d3226400a5075c058249974 *tests/testthat/test-check_stations.R
82e826a27e36d72e068ce8d0e07d7bbe *tests/testthat/test-defunct.R
3324d62642fa47b592bce9546571460b *tests/testthat/test-dyntaxa_api_functions.R
518ce164173f8998603642f4791f284b *tests/testthat/test-hab_api_functions.R
9be8c46f0b034314a9ca336e67bc4060 *tests/testthat/test-iRfcb_functions.R
2190ff0dc13eb09b3b3eefd745ab0cea *tests/testthat/test-nua_api_functions.R
3e473c2c8b9eda71b0e542557697f044 *tests/testthat/test-plankton_toolbox.R
3dd3719f0a3b8a3b39830dcd3b382ded *tests/testthat/test-plot_map_leaflet.R
43ac2b34118a22620c75f2a716c56579 *tests/testthat/test-read_delivery_template.R
7fb29f42e5509cabde699c9cb12afca9 *tests/testthat/test-run_qc_app.R
d9cd9332adb9ebf80c4b9b6964b3ac40 *tests/testthat/test-scatterplot.R
1803cb12e0b85bfc063baa967eae7321 *tests/testthat/test-shark_api_functions.R
4c8f5a5908968a9c3e8a04a2b809296e *tests/testthat/test-shark_read.R
04cc0cc3b5acf8416f24869346962719 *tests/testthat/test-util.R
90cf35daeeae6633b363045ecc876060 *tests/testthat/test-worms_api_functions.R
f225116de033e7912f118afedd6bef3b *tests/testthat/test-xylookup.R
3cd02c01a131a105c013d0875a45aa9e *tests/testthat/test_data/test_data.zip
cb4fc6eb66f00f5d13e9817dab710178 *vignettes/quality_control.Rmd
22ee26c4855e77f4ab3758cdf50636ad *vignettes/retrieve_hab_data.Rmd
112bcc3edb05be4ed4525b7aadfb2378 *vignettes/retrieve_nordic_microalgae_data.Rmd
6d0e0d08da185feeb6e1c1c401b9d85b *vignettes/retrieve_shark_data.Rmd
05e043b249756dfd2d404e1b5dc44aed *vignettes/retrieve_worms_data.Rmd
